Wall clock time and date at job start Sun Mar 29 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47332 * 95.08505 * 3 2 1 5 5 H 1.48501 * 109.46837 * 215.08324 * 3 2 1 6 6 H 1.48492 * 109.47343 * 335.08181 * 3 2 1 7 7 C 1.37882 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 353.08410 * 7 2 1 9 9 C 1.50694 * 120.00162 * 173.08234 * 7 2 1 10 10 H 1.09009 * 109.50617 * 31.11404 * 9 7 2 11 11 C 1.53122 * 109.50428 * 271.03487 * 9 7 2 12 12 C 1.53123 * 109.16083 * 182.40401 * 11 9 7 13 13 C 1.53031 * 109.27707 * 57.65396 * 12 11 9 14 14 N 1.46846 * 109.52700 * 300.81850 * 13 12 11 15 15 C 1.46903 * 111.00226 * 185.83812 * 14 13 12 16 16 C 1.52992 * 109.47424 * 283.65022 * 15 14 13 17 17 F 1.39902 * 109.47302 * 53.41882 * 16 15 14 18 18 F 1.39898 * 109.47430 * 173.42144 * 16 15 14 19 19 F 1.39900 * 109.47031 * 293.42337 * 16 15 14 20 20 C 1.46853 * 111.19637 * 61.74173 * 14 13 12 21 21 H 0.97001 * 120.00225 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.52558 * 302.31163 * 11 9 7 23 23 H 1.09003 * 109.52086 * 62.43432 * 11 9 7 24 24 H 1.09002 * 109.50072 * 177.59603 * 12 11 9 25 25 H 1.08997 * 109.49964 * 297.67397 * 12 11 9 26 26 H 1.09000 * 109.46083 * 60.84020 * 13 12 11 27 27 H 1.09003 * 109.46363 * 180.81190 * 13 12 11 28 28 H 1.09001 * 109.46766 * 43.65327 * 15 14 13 29 29 H 1.08997 * 109.46950 * 163.64627 * 15 14 13 30 30 H 1.09000 * 109.46223 * 178.24318 * 20 14 13 31 31 H 1.09006 * 109.45825 * 58.27639 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6041 1.9844 1.3945 5 1 3.4888 1.4735 -0.8047 6 1 1.3970 2.6813 -0.5898 7 6 2.0045 -1.1941 -0.0005 8 1 1.4704 -2.1260 0.1117 9 6 3.5033 -1.1988 -0.1577 10 1 3.9179 -0.2900 0.2788 11 6 3.8611 -1.2606 -1.6452 12 6 5.3837 -1.3256 -1.7936 13 6 5.9137 -2.5442 -1.0347 14 7 5.5463 -2.4374 0.3831 15 6 6.1561 -3.5192 1.1679 16 6 5.3875 -4.8199 0.9269 17 9 5.3082 -5.0668 -0.4479 18 9 6.0543 -5.8784 1.5531 19 9 4.0973 -4.7039 1.4550 20 6 4.0878 -2.4210 0.5538 21 1 -0.4850 0.8400 -0.0004 22 1 3.4134 -2.1488 -2.0910 23 1 3.4828 -0.3706 -2.1482 24 1 5.6431 -1.4128 -2.8487 25 1 5.8283 -0.4189 -1.3833 26 1 5.4792 -3.4511 -1.4552 27 1 6.9991 -2.5853 -1.1263 28 1 7.1944 -3.6487 0.8626 29 1 6.1179 -3.2655 2.2273 30 1 3.8470 -2.3727 1.6158 31 1 3.6619 -3.3286 0.1259 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107467769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:11 Heat of formation + Delta-G solvation = -154.550490 kcal Electronic energy + Delta-G solvation = -18197.972847 eV Core-core repulsion = 14871.097332 eV Total energy + Delta-G solvation = -3326.875516 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.02490 -47.52102 -47.43551 -38.50303 -34.08304 -32.27222 -30.34883 -28.37920 -25.10264 -23.88333 -22.04266 -21.33745 -19.27492 -18.41477 -18.18962 -17.22200 -16.61242 -15.37949 -14.77427 -14.52540 -14.29471 -14.05063 -13.88714 -13.75569 -13.60774 -13.40979 -12.95180 -12.79501 -12.49774 -12.19022 -11.84363 -11.77022 -11.08623 -11.00871 -10.64108 -10.16966 -9.87936 -9.59187 -9.38665 -8.97844 -8.49181 -8.11662 -6.07138 -4.06338 2.94263 3.31327 3.39404 3.42786 3.82752 4.00714 4.16909 4.44044 4.49402 5.09237 5.21136 5.38157 5.44333 5.52602 5.79900 5.96189 6.06391 6.24023 6.32632 6.42220 6.62283 6.73970 6.84382 7.15789 7.30217 7.35639 7.50995 7.81250 8.52860 8.98259 9.56171 11.06005 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.008417 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.784793 B = 3325.981386 C = 3678.580068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.291 1.291 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.038 0.962 11 C -0.116 4.116 12 C -0.119 4.119 13 C 0.038 3.962 14 N -0.524 5.524 15 C 0.018 3.982 16 C 0.411 3.589 17 F -0.184 7.184 18 F -0.195 7.195 19 F -0.175 7.175 20 C 0.053 3.947 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.774 -6.493 0.479 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.003 3.997 10 H 0.056 0.944 11 C -0.154 4.154 12 C -0.157 4.157 13 C -0.089 4.089 14 N -0.246 5.246 15 C -0.114 4.114 16 C 0.354 3.646 17 F -0.166 7.166 18 F -0.177 7.177 19 F -0.156 7.156 20 C -0.073 4.073 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.755 -5.929 0.633 14.992 hybrid contribution -0.122 -0.129 -0.308 0.355 sum 13.633 -6.058 0.325 14.922 Atomic orbital electron populations 1.69917 1.06370 1.26992 1.50450 1.25027 0.94642 0.99002 0.94242 0.86867 0.80309 0.83531 0.78849 1.20214 1.18632 1.21776 1.20927 0.89235 0.94690 1.50292 0.91004 1.19139 0.96117 0.93458 0.90968 0.94394 1.21933 0.91981 1.01147 1.00334 1.21667 0.98561 0.97338 0.98110 1.22494 0.99574 0.99458 0.87413 1.62329 1.13594 1.38938 1.09736 1.23749 0.99436 0.84501 1.03706 1.22516 0.79646 0.88505 0.73909 1.93102 1.96420 1.95137 1.31901 1.93148 1.80457 1.61422 1.82639 1.93230 1.40238 1.95930 1.86252 1.22776 0.82209 1.00529 1.01777 0.92667 0.93004 0.92722 0.92547 0.91967 0.92752 0.91576 0.87122 0.86427 0.90541 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.46 26.53 -169.99 -4.51 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.26 -6.10 6.42 56.52 0.36 -5.74 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.51 -14.25 8.86 -34.44 -0.31 -14.55 16 8 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 9 C 0.02 0.52 1.83 -91.69 -0.17 0.35 16 10 H 0.04 0.90 5.58 -51.92 -0.29 0.61 16 11 C -0.12 -2.42 5.16 -26.61 -0.14 -2.56 16 12 C -0.12 -2.00 6.09 -26.65 -0.16 -2.17 16 13 C 0.04 0.58 5.02 -3.84 -0.02 0.56 16 14 N -0.52 -8.57 4.86 -234.67 -1.14 -9.71 16 15 C 0.02 0.22 5.74 -3.83 -0.02 0.20 16 16 C 0.41 5.90 2.83 37.15 0.10 6.00 16 17 F -0.18 -2.85 13.82 2.25 0.03 -2.81 16 18 F -0.19 -2.62 17.32 2.25 0.04 -2.58 16 19 F -0.18 -2.96 13.97 2.25 0.03 -2.92 16 20 C 0.05 1.06 3.23 -3.83 -0.01 1.05 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.87 5.53 -51.93 -0.29 0.58 16 27 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 28 H 0.11 1.09 7.86 -51.93 -0.41 0.68 16 29 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.55 7.80 -51.93 -0.41 1.15 16 31 H 0.04 0.90 5.71 -51.93 -0.30 0.61 16 LS Contribution 251.98 15.07 3.80 3.80 Total: -1.00 -29.78 251.98 -5.56 -35.34 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -3.77 Total: -2.31 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.82 Total: -9.13 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.37 Total: -36.34 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 0.10 Total: -8.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.51 Total: 16.95 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.78 -5.56 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107467769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.209 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds