Wall clock time and date at job start Sun Mar 29 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48499 * 109.47332 * 95.08505 * 3 2 1 5 5 H 1.48501 * 109.46837 * 215.08324 * 3 2 1 6 6 H 1.48492 * 109.47343 * 335.08181 * 3 2 1 7 7 C 1.37882 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 353.08410 * 7 2 1 9 9 C 1.50694 * 120.00162 * 173.08234 * 7 2 1 10 10 H 1.09009 * 109.50617 * 31.11404 * 9 7 2 11 11 C 1.53122 * 109.50428 * 271.03487 * 9 7 2 12 12 C 1.53123 * 109.16083 * 182.40401 * 11 9 7 13 13 C 1.53031 * 109.27707 * 57.65396 * 12 11 9 14 14 N 1.46846 * 109.52700 * 300.81850 * 13 12 11 15 15 C 1.46903 * 111.00226 * 185.83812 * 14 13 12 16 16 C 1.52992 * 109.47424 * 283.65022 * 15 14 13 17 17 F 1.39902 * 109.47302 * 53.41882 * 16 15 14 18 18 F 1.39898 * 109.47430 * 173.42144 * 16 15 14 19 19 F 1.39900 * 109.47031 * 293.42337 * 16 15 14 20 20 C 1.46853 * 111.19637 * 61.74173 * 14 13 12 21 21 H 0.97001 * 120.00225 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.52558 * 302.31163 * 11 9 7 23 23 H 1.09003 * 109.52086 * 62.43432 * 11 9 7 24 24 H 1.09002 * 109.50072 * 177.59603 * 12 11 9 25 25 H 1.08997 * 109.49964 * 297.67397 * 12 11 9 26 26 H 1.09000 * 109.46083 * 60.84020 * 13 12 11 27 27 H 1.09003 * 109.46363 * 180.81190 * 13 12 11 28 28 H 1.09001 * 109.46766 * 43.65327 * 15 14 13 29 29 H 1.08997 * 109.46950 * 163.64627 * 15 14 13 30 30 H 1.09000 * 109.46223 * 178.24318 * 20 14 13 31 31 H 1.09006 * 109.45825 * 58.27639 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6041 1.9844 1.3945 5 1 3.4888 1.4735 -0.8047 6 1 1.3970 2.6813 -0.5898 7 6 2.0045 -1.1941 -0.0005 8 1 1.4704 -2.1260 0.1117 9 6 3.5033 -1.1988 -0.1577 10 1 3.9179 -0.2900 0.2788 11 6 3.8611 -1.2606 -1.6452 12 6 5.3837 -1.3256 -1.7936 13 6 5.9137 -2.5442 -1.0347 14 7 5.5463 -2.4374 0.3831 15 6 6.1561 -3.5192 1.1679 16 6 5.3875 -4.8199 0.9269 17 9 5.3082 -5.0668 -0.4479 18 9 6.0543 -5.8784 1.5531 19 9 4.0973 -4.7039 1.4550 20 6 4.0878 -2.4210 0.5538 21 1 -0.4850 0.8400 -0.0004 22 1 3.4134 -2.1488 -2.0910 23 1 3.4828 -0.3706 -2.1482 24 1 5.6431 -1.4128 -2.8487 25 1 5.8283 -0.4189 -1.3833 26 1 5.4792 -3.4511 -1.4552 27 1 6.9991 -2.5853 -1.1263 28 1 7.1944 -3.6487 0.8626 29 1 6.1179 -3.2655 2.2273 30 1 3.8470 -2.3727 1.6158 31 1 3.6619 -3.3286 0.1259 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107467769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:11 Heat of formation + Delta-G solvation = -175.092109 kcal Electronic energy + Delta-G solvation = -18198.863599 eV Core-core repulsion = 14871.097332 eV Total energy + Delta-G solvation = -3327.766267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.18910 -48.66448 -48.63396 -39.91840 -35.73828 -34.10143 -32.02697 -29.63271 -27.01079 -25.18404 -23.35171 -22.91857 -20.78742 -19.59518 -19.43639 -19.02471 -18.10500 -16.89873 -16.11337 -15.90840 -15.72140 -15.39926 -15.16124 -15.03265 -14.92601 -14.76951 -14.60082 -14.26893 -14.20143 -13.55419 -13.07989 -13.01878 -12.86010 -12.74229 -12.29798 -11.82251 -11.68263 -11.33634 -11.10323 -10.86371 -10.62472 -9.44499 -8.28323 -6.32065 1.38131 1.38272 1.50727 1.84113 2.37352 2.62291 2.90314 3.07321 3.08301 3.35739 4.04197 4.06610 4.22088 4.28259 4.49688 4.54111 4.66087 4.79746 4.89126 4.93677 5.05219 5.19616 5.24513 5.54788 5.61488 5.72991 5.95826 5.99866 6.34571 6.75532 7.33848 8.88814 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.008417 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.784793 B = 3325.981386 C = 3678.580068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.239 1.239 6 H -0.291 1.291 7 C -0.518 4.518 8 H 0.025 0.975 9 C 0.019 3.981 10 H 0.038 0.962 11 C -0.115 4.115 12 C -0.113 4.113 13 C 0.036 3.964 14 N -0.526 5.526 15 C 0.021 3.979 16 C 0.408 3.592 17 F -0.192 7.192 18 F -0.188 7.188 19 F -0.196 7.196 20 C 0.067 3.933 21 H 0.265 0.735 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.152 0.848 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.234 -5.906 0.332 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.163 1.163 6 H -0.217 1.217 7 C -0.556 4.556 8 H 0.043 0.957 9 C 0.000 4.000 10 H 0.056 0.944 11 C -0.154 4.154 12 C -0.150 4.150 13 C -0.091 4.091 14 N -0.248 5.248 15 C -0.109 4.109 16 C 0.352 3.648 17 F -0.173 7.173 18 F -0.169 7.169 19 F -0.178 7.178 20 C -0.060 4.060 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.085 0.915 31 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 17.247 -5.366 0.484 18.069 hybrid contribution -1.236 -0.454 -0.256 1.341 sum 16.011 -5.820 0.229 17.038 Atomic orbital electron populations 1.70077 1.08406 1.28071 1.52587 1.25945 0.95408 1.03153 0.94001 0.85779 0.79555 0.78271 0.79538 1.19243 1.16272 1.21707 1.21229 0.92083 0.92889 1.49408 0.95707 1.19106 0.92895 0.94939 0.93080 0.94415 1.21804 0.95690 0.99820 0.98037 1.21624 0.94631 0.98445 1.00325 1.22615 1.01922 0.98245 0.86342 1.62202 1.10624 1.40967 1.10975 1.23984 1.00553 0.82056 1.04322 1.22816 0.79002 0.89551 0.73472 1.93090 1.96419 1.95264 1.32547 1.93160 1.80079 1.61254 1.82447 1.93195 1.42000 1.96070 1.86518 1.22368 0.85095 0.98118 1.00466 0.92597 0.94468 0.94115 0.89848 0.91441 0.93471 0.87406 0.83036 0.84644 0.91497 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.94 44.34 26.53 68.60 1.82 46.16 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.24 -10.28 6.42 99.48 0.64 -9.64 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.52 -29.83 8.86 25.60 0.23 -29.60 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 9 C 0.02 0.88 1.83 -11.49 -0.02 0.86 16 10 H 0.04 1.74 5.58 -2.38 -0.01 1.72 16 11 C -0.12 -4.72 5.16 30.68 0.16 -4.56 16 12 C -0.11 -3.39 6.09 30.65 0.19 -3.20 16 13 C 0.04 0.95 5.02 86.32 0.43 1.38 16 14 N -0.53 -15.54 4.86 -896.36 -4.35 -19.89 16 15 C 0.02 0.46 5.74 86.30 0.50 0.95 16 16 C 0.41 10.88 2.83 71.98 0.20 11.09 16 17 F -0.19 -5.58 13.82 44.97 0.62 -4.96 16 18 F -0.19 -4.59 17.32 44.97 0.78 -3.81 16 19 F -0.20 -6.60 13.97 44.97 0.63 -5.97 16 20 C 0.07 2.64 3.23 86.32 0.28 2.92 16 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.36 5.53 -2.39 -0.01 1.35 16 27 H 0.11 2.07 7.95 -2.39 -0.02 2.05 16 28 H 0.15 2.10 7.86 -2.39 -0.02 2.08 16 29 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.72 7.80 -2.39 -0.02 2.70 16 31 H 0.03 1.10 5.71 -2.38 -0.01 1.09 16 Total: -1.00 -67.19 251.98 3.28 -63.91 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.07 Total: 3.45 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 2.42 Total: -19.01 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -4.06 Total: -79.77 kcal Atomic # 9 Polarization: -16.77 SS G_CDS: 2.03 Total: -14.74 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.82 Total: 46.16 kcal Total: -67.19 3.28 -63.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107467769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.182 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds