Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21293 * 120.00006 * 240.00291 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47459 * 59.99812 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47211 * 300.00250 * 11 9 7 15 15 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 16 16 C 1.38224 * 120.01411 * 60.00167 * 15 2 1 17 17 C 1.38217 * 120.02821 * 179.97438 * 16 15 2 18 18 C 1.38273 * 120.05337 * 0.02562 * 17 16 15 19 19 C 1.38179 * 120.02322 * 0.02562 * 18 17 16 20 20 C 1.38443 * 120.01456 * 239.72364 * 15 2 1 21 21 F 1.35101 * 120.02559 * 0.02562 * 20 15 2 22 22 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 23 23 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 26 26 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 27 27 H 1.07995 * 119.98242 * 359.95199 * 16 15 2 28 28 H 1.07997 * 119.97748 * 180.02562 * 17 16 15 29 29 H 1.07994 * 119.99127 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.01106 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1684 -0.8931 -3.5739 8 1 2.7894 -1.7712 -3.4747 9 6 1.8374 -0.4151 -4.8359 10 7 1.0823 0.6536 -4.9565 11 14 2.4659 -1.2917 -6.3610 12 1 1.9711 -2.6918 -6.3666 13 1 1.9759 -0.5882 -7.5736 14 1 3.9509 -1.2916 -6.3554 15 6 2.0323 -0.7103 1.2305 16 6 1.6986 -2.0336 1.4496 17 6 2.1596 -2.6856 2.5778 18 6 2.9546 -2.0148 3.4889 19 6 3.2887 -0.6916 3.2725 20 6 2.8330 -0.0394 2.1390 21 9 3.1640 1.2526 1.9234 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.1493 0.5388 -2.5436 26 1 0.8509 0.9871 -5.8375 27 1 1.0771 -2.5583 0.7391 28 1 1.8987 -3.7196 2.7480 29 1 3.3139 -2.5250 4.3703 30 1 3.9093 -0.1678 3.9844 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108992864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -68.802842 kcal Electronic energy + Delta-G solvation = -16390.193062 eV Core-core repulsion = 13485.432279 eV Total energy + Delta-G solvation = -2904.760783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.62678 -39.34016 -37.79608 -34.10887 -33.50601 -31.22585 -30.26174 -29.05344 -25.25934 -24.05856 -22.42238 -21.48784 -18.91271 -17.94860 -17.33262 -16.41914 -15.68876 -15.45717 -15.17249 -14.54602 -14.13658 -13.89878 -13.77069 -13.19557 -12.89330 -12.72123 -12.22721 -11.88826 -11.65260 -11.60692 -11.49088 -11.08296 -10.71696 -10.59280 -10.44747 -10.19209 -9.51192 -8.64790 -8.52913 -8.22260 -7.98044 -6.42761 -3.83800 1.42246 1.50574 3.19276 3.25304 3.29705 3.83151 3.89008 4.17915 4.52304 4.82649 4.90946 5.09733 5.18357 5.25359 5.44206 5.56667 5.65875 5.72067 5.90116 6.14805 6.17809 6.26149 6.32230 6.40294 6.54042 6.64650 6.77374 7.15874 7.53924 8.03819 8.58830 9.15647 9.52531 10.03341 10.74720 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.006162 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.418960 B = 4542.578441 C = 4744.806642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 H 0.093 0.907 4 C 0.447 3.553 5 O -0.588 6.588 6 N -0.557 5.557 7 C -0.302 4.302 8 H 0.103 0.897 9 C 0.024 3.976 10 N -0.900 5.900 11 Si 0.931 3.069 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.274 1.274 15 C -0.078 4.078 16 C -0.053 4.053 17 C -0.135 4.135 18 C -0.102 4.102 19 C -0.162 4.162 20 C 0.097 3.903 21 F -0.141 7.141 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.393 0.607 26 H 0.273 0.727 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -1.194 13.064 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.111 0.889 4 C 0.232 3.768 5 O -0.473 6.473 6 N -0.193 5.193 7 C -0.431 4.431 8 H 0.121 0.879 9 C -0.178 4.178 10 N -0.541 5.541 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.199 1.199 15 C -0.079 4.079 16 C -0.071 4.071 17 C -0.153 4.153 18 C -0.120 4.120 19 C -0.180 4.180 20 C 0.078 3.922 21 F -0.120 7.120 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.227 0.773 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.830 -1.697 12.924 13.061 hybrid contribution 0.130 0.390 -0.963 1.047 sum -0.700 -1.307 11.961 12.053 Atomic orbital electron populations 1.21762 0.92695 1.02616 1.02263 1.20156 0.97207 1.00138 0.91883 0.88867 1.19589 0.85808 0.87338 0.84017 1.90530 1.42121 1.28399 1.86267 1.41840 1.45550 1.27694 1.04170 1.19680 1.29361 1.10961 0.83140 0.87945 1.25268 0.96841 0.96434 0.99269 1.69606 1.36601 1.22712 1.25200 0.85915 0.79166 0.79149 0.79971 1.19881 1.20927 1.19898 1.19516 0.98164 0.95189 0.95031 1.20868 0.97801 0.92651 0.95743 1.21145 0.99212 1.00112 0.94850 1.20886 0.98057 0.93557 0.99473 1.20980 1.03503 0.96084 0.97473 1.17561 0.99255 0.79144 0.96282 1.91454 1.91004 1.34698 1.94853 0.92383 0.91317 0.92080 0.77310 0.91754 0.85153 0.85737 0.85609 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.90 37.16 0.33 -1.81 16 2 C -0.07 -1.36 2.88 -92.93 -0.27 -1.63 16 3 H 0.09 1.72 7.13 -51.93 -0.37 1.35 16 4 C 0.45 10.75 6.98 -10.99 -0.08 10.67 16 5 O -0.59 -15.99 14.68 5.55 0.08 -15.91 16 6 N -0.56 -14.28 5.18 -10.96 -0.06 -14.33 16 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 10 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 11 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C -0.08 -1.39 4.40 -104.55 -0.46 -1.85 16 16 C -0.05 -0.87 7.93 -39.59 -0.31 -1.19 16 17 C -0.14 -1.85 10.04 -39.58 -0.40 -2.25 16 18 C -0.10 -1.28 10.04 -39.59 -0.40 -1.67 16 19 C -0.16 -2.24 10.03 -39.51 -0.40 -2.64 16 20 C 0.10 1.62 7.25 -39.41 -0.29 1.34 16 21 F -0.14 -2.43 16.19 2.25 0.04 -2.39 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 1.09 7.56 -51.93 -0.39 0.70 16 24 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 25 H 0.39 9.66 7.32 -40.82 -0.30 9.36 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.13 2.21 7.52 -52.49 -0.39 1.82 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -30.88 268.32 -5.74 -36.62 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.04 Total: 8.80 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.51 Total: -9.10 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.67 Total: -38.12 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.08 Total: -15.91 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.88 -5.74 -36.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108992864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.182 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds