Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21293 * 120.00006 * 240.00291 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47459 * 59.99812 * 11 9 7 13 13 H 1.48502 * 109.47317 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47211 * 300.00250 * 11 9 7 15 15 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 16 16 C 1.38224 * 120.01411 * 60.00167 * 15 2 1 17 17 C 1.38217 * 120.02821 * 179.97438 * 16 15 2 18 18 C 1.38273 * 120.05337 * 0.02562 * 17 16 15 19 19 C 1.38179 * 120.02322 * 0.02562 * 18 17 16 20 20 C 1.38443 * 120.01456 * 239.72364 * 15 2 1 21 21 F 1.35101 * 120.02559 * 0.02562 * 20 15 2 22 22 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 23 23 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 26 26 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 27 27 H 1.07995 * 119.98242 * 359.95199 * 16 15 2 28 28 H 1.07997 * 119.97748 * 180.02562 * 17 16 15 29 29 H 1.07994 * 119.99127 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.01106 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1684 -0.8931 -3.5739 8 1 2.7894 -1.7712 -3.4747 9 6 1.8374 -0.4151 -4.8359 10 7 1.0823 0.6536 -4.9565 11 14 2.4659 -1.2917 -6.3610 12 1 1.9711 -2.6918 -6.3666 13 1 1.9759 -0.5882 -7.5736 14 1 3.9509 -1.2916 -6.3554 15 6 2.0323 -0.7103 1.2305 16 6 1.6986 -2.0336 1.4496 17 6 2.1596 -2.6856 2.5778 18 6 2.9546 -2.0148 3.4889 19 6 3.2887 -0.6916 3.2725 20 6 2.8330 -0.0394 2.1390 21 9 3.1640 1.2526 1.9234 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.1493 0.5388 -2.5436 26 1 0.8509 0.9871 -5.8375 27 1 1.0771 -2.5583 0.7391 28 1 1.8987 -3.7196 2.7480 29 1 3.3139 -2.5250 4.3703 30 1 3.9093 -0.1678 3.9844 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108992864.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -87.941811 kcal Electronic energy + Delta-G solvation = -16391.022990 eV Core-core repulsion = 13485.432279 eV Total energy + Delta-G solvation = -2905.590711 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.89593 -40.87001 -39.34509 -36.05897 -35.06574 -33.22752 -31.40980 -30.32825 -27.19719 -25.50758 -23.64838 -22.89360 -20.68625 -19.92983 -18.56472 -17.93454 -17.13340 -16.93287 -16.55310 -16.31644 -15.80603 -15.56035 -15.05124 -14.63888 -14.53833 -14.06033 -13.64102 -13.46516 -13.11241 -12.99459 -12.89902 -12.80305 -12.45914 -12.15240 -12.06579 -11.77870 -11.51836 -10.34662 -10.05101 -9.81445 -9.54741 -8.48925 -5.98608 0.24802 0.35717 1.38017 1.40331 1.51658 1.99465 2.27821 2.67543 3.15775 3.23110 3.36692 3.56353 3.85509 4.07399 4.22967 4.27757 4.39308 4.46364 4.49780 4.79832 4.88089 5.01595 5.14218 5.18131 5.28334 5.38416 5.48700 5.57091 5.94827 6.03777 6.54644 7.07839 7.50681 8.04924 8.68211 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.006162 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.418960 B = 4542.578441 C = 4744.806642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 H 0.094 0.906 4 C 0.446 3.554 5 O -0.623 6.623 6 N -0.566 5.566 7 C -0.338 4.338 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.995 3.005 12 H -0.270 1.270 13 H -0.269 1.269 14 H -0.273 1.273 15 C -0.106 4.106 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.157 4.157 20 C 0.072 3.928 21 F -0.151 7.151 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.396 0.604 26 H 0.279 0.721 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -1.750 14.428 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 H 0.112 0.888 4 C 0.233 3.767 5 O -0.510 6.510 6 N -0.202 5.202 7 C -0.467 4.467 8 H 0.098 0.902 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.818 3.182 12 H -0.195 1.195 13 H -0.193 1.193 14 H -0.198 1.198 15 C -0.107 4.107 16 C -0.092 4.092 17 C -0.149 4.149 18 C -0.106 4.106 19 C -0.175 4.175 20 C 0.053 3.947 21 F -0.129 7.129 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.230 0.770 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.172 0.828 29 H 0.188 0.812 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.656 -2.232 14.299 14.487 hybrid contribution 0.093 0.530 -1.283 1.392 sum -0.563 -1.702 13.016 13.139 Atomic orbital electron populations 1.21729 0.90463 1.02952 1.03442 1.20062 0.99064 0.99407 0.89964 0.88795 1.20516 0.84458 0.86762 0.84972 1.90484 1.43434 1.30044 1.87033 1.41905 1.46020 1.27871 1.04434 1.19679 1.30815 1.11444 0.84783 0.90161 1.26077 0.96538 0.96963 1.01555 1.69673 1.36729 1.23312 1.26247 0.84967 0.78472 0.78217 0.76542 1.19463 1.19343 1.19823 1.19536 1.00004 0.96054 0.95140 1.20914 0.98801 0.92481 0.97034 1.21526 0.98323 1.01406 0.93674 1.21399 0.96210 0.92908 1.00106 1.21393 1.02794 0.96718 0.96618 1.17867 1.00112 0.79147 0.97546 1.91424 1.91162 1.35291 1.95058 0.89459 0.91760 0.92179 0.76995 0.91165 0.86672 0.82840 0.81233 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.90 71.98 0.64 -3.42 16 2 C -0.06 -2.45 2.88 -12.29 -0.04 -2.48 16 3 H 0.09 3.56 7.13 -2.39 -0.02 3.54 16 4 C 0.45 22.21 6.98 87.66 0.61 22.82 16 5 O -0.62 -35.17 14.68 -3.07 -0.05 -35.22 16 6 N -0.57 -30.08 5.18 -306.98 -1.59 -31.67 16 7 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 10 N -0.92 -50.23 13.05 21.66 0.28 -49.94 16 11 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 C -0.11 -3.80 4.40 -19.82 -0.09 -3.89 16 16 C -0.07 -2.44 7.93 22.26 0.18 -2.26 16 17 C -0.13 -3.27 10.04 22.27 0.22 -3.05 16 18 C -0.09 -1.88 10.04 22.26 0.22 -1.65 16 19 C -0.16 -3.90 10.03 22.31 0.22 -3.68 16 20 C 0.07 2.36 7.25 22.38 0.16 2.52 16 21 F -0.15 -5.13 16.19 44.97 0.73 -4.40 16 22 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.06 2.06 7.56 -2.39 -0.02 2.04 16 24 H 0.06 1.89 7.39 -2.39 -0.02 1.87 16 25 H 0.40 20.13 7.32 -92.71 -0.68 19.45 16 26 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.12 4.03 7.52 -2.91 -0.02 4.01 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -67.98 268.32 5.31 -62.67 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.49 Total: 27.24 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.42 Total: -13.96 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.31 Total: -81.61 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.05 Total: -35.22 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.73 Total: -4.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.98 5.31 -62.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108992864.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.273 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds