Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50698 * 109.47102 * 120.00335 * 2 1 3 5 5 O 1.21294 * 120.00302 * 119.99930 * 4 2 1 6 6 N 1.34778 * 120.00017 * 299.99943 * 4 2 1 7 7 C 1.37101 * 120.00159 * 179.97438 * 6 4 2 8 8 H 1.07997 * 120.00038 * 0.02562 * 7 6 4 9 9 C 1.38950 * 119.99855 * 179.97438 * 7 6 4 10 10 N 1.31415 * 120.00134 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47191 * 59.99936 * 11 9 7 13 13 H 1.48499 * 109.47146 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46828 * 300.00081 * 11 9 7 15 15 C 1.50706 * 109.47197 * 239.99755 * 2 1 3 16 16 C 1.38216 * 120.01546 * 300.00336 * 15 2 1 17 17 C 1.38217 * 120.02581 * 179.97438 * 16 15 2 18 18 C 1.38265 * 120.05343 * 0.02562 * 17 16 15 19 19 C 1.38181 * 120.02597 * 359.97438 * 18 17 16 20 20 C 1.38443 * 120.00897 * 119.97904 * 15 2 1 21 21 F 1.35099 * 120.02540 * 0.04305 * 20 15 2 22 22 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47333 * 299.99684 * 1 2 3 24 24 H 1.09000 * 109.46989 * 59.99986 * 1 2 3 25 25 H 0.97005 * 119.99774 * 359.97438 * 6 4 2 26 26 H 0.96991 * 120.00307 * 180.02562 * 10 9 7 27 27 H 1.08000 * 119.98383 * 0.02562 * 16 15 2 28 28 H 1.07997 * 119.97673 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.99414 * 179.72576 * 18 17 16 30 30 H 1.08002 * 120.01438 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7296 -1.6967 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1632 -0.8967 3.5740 8 1 2.7841 -1.7748 3.4749 9 6 1.8279 -0.4217 4.8360 10 7 1.0728 0.6471 4.9566 11 14 2.4506 -1.3023 6.3612 12 1 3.9356 -1.3029 6.3609 13 1 1.9556 -0.6023 7.5737 14 1 1.9550 -2.7022 6.3614 15 6 2.0323 -0.7105 -1.2305 16 6 1.6985 -2.0337 -1.4495 17 6 2.1587 -2.6854 -2.5782 18 6 2.9538 -2.0148 -3.4892 19 6 3.2888 -0.6918 -3.2724 20 6 2.8279 -0.0378 -2.1421 21 9 3.1550 1.2556 -1.9289 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.1493 0.5388 2.5436 26 1 0.8391 0.9789 5.8375 27 1 1.0772 -2.5584 -0.7388 28 1 1.8978 -3.7195 -2.7483 29 1 3.3165 -2.5262 -4.3685 30 1 3.9095 -0.1681 -3.9843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108992866.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = -87.926762 kcal Electronic energy + Delta-G solvation = -16390.661868 eV Core-core repulsion = 13485.071810 eV Total energy + Delta-G solvation = -2905.590059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.89588 -40.87003 -39.34585 -36.05866 -35.06611 -33.22729 -31.41011 -30.32805 -27.19767 -25.50728 -23.64963 -22.89367 -20.68603 -19.92962 -18.56441 -17.93542 -17.13028 -16.93187 -16.55697 -16.31451 -15.80599 -15.56114 -15.05075 -14.63924 -14.53724 -14.06024 -13.64088 -13.46564 -13.11270 -12.99462 -12.90030 -12.80242 -12.45917 -12.15240 -12.06620 -11.77914 -11.51831 -10.34579 -10.05090 -9.81426 -9.54777 -8.48889 -5.98585 0.24792 0.35759 1.38046 1.40322 1.51668 1.99469 2.27828 2.67554 3.15621 3.23297 3.36710 3.56290 3.85515 4.07382 4.22935 4.27742 4.39331 4.46326 4.49762 4.79812 4.88029 5.01561 5.14204 5.18143 5.28309 5.38457 5.48711 5.57107 5.94841 6.03783 6.54675 7.07871 7.50689 8.04952 8.68257 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.039829 B = 0.006162 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.842455 B = 4543.059069 C = 4747.787027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 H 0.094 0.906 4 C 0.446 3.554 5 O -0.623 6.623 6 N -0.566 5.566 7 C -0.338 4.338 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.995 3.005 12 H -0.273 1.273 13 H -0.269 1.269 14 H -0.270 1.270 15 C -0.106 4.106 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.089 4.089 19 C -0.157 4.157 20 C 0.072 3.928 21 F -0.151 7.151 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.396 0.604 26 H 0.279 0.721 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.170 0.830 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -1.741 -14.427 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 H 0.112 0.888 4 C 0.233 3.767 5 O -0.510 6.510 6 N -0.202 5.202 7 C -0.467 4.467 8 H 0.098 0.902 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.818 3.182 12 H -0.198 1.198 13 H -0.193 1.193 14 H -0.195 1.195 15 C -0.107 4.107 16 C -0.092 4.092 17 C -0.149 4.149 18 C -0.106 4.106 19 C -0.175 4.175 20 C 0.053 3.947 21 F -0.129 7.129 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.230 0.770 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.172 0.828 29 H 0.188 0.812 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.640 -2.222 -14.298 14.484 hybrid contribution 0.088 0.527 1.283 1.390 sum -0.551 -1.695 -13.015 13.137 Atomic orbital electron populations 1.21729 0.90468 1.02950 1.03440 1.20060 0.99054 0.99409 0.89968 0.88790 1.20516 0.84480 0.86744 0.84971 1.90485 1.43426 1.30051 1.87036 1.41905 1.46133 1.27758 1.04434 1.19678 1.30879 1.11380 0.84780 0.90160 1.26077 0.96511 0.96988 1.01553 1.69669 1.36673 1.23367 1.26254 0.84968 0.78479 0.78212 0.76544 1.19810 1.19344 1.19475 1.19535 1.00078 0.96030 0.95081 1.20913 0.98786 0.92503 0.97041 1.21524 0.98345 1.01397 0.93651 1.21398 0.96212 0.92931 1.00094 1.21394 1.02717 0.96707 0.96697 1.17862 1.00185 0.79070 0.97561 1.91423 1.91256 1.35158 1.95092 0.92183 0.91760 0.89462 0.76995 0.91163 0.86677 0.82842 0.81236 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.90 71.98 0.64 -3.42 16 2 C -0.06 -2.45 2.89 -12.29 -0.04 -2.48 16 3 H 0.09 3.56 7.13 -2.39 -0.02 3.54 16 4 C 0.45 22.20 6.98 87.66 0.61 22.81 16 5 O -0.62 -35.17 14.68 -3.07 -0.05 -35.22 16 6 N -0.57 -30.08 5.18 -306.98 -1.59 -31.67 16 7 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 10 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 11 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 C -0.11 -3.80 4.40 -19.82 -0.09 -3.88 16 16 C -0.07 -2.44 7.93 22.26 0.18 -2.27 16 17 C -0.13 -3.27 10.04 22.27 0.22 -3.05 16 18 C -0.09 -1.88 10.04 22.26 0.22 -1.66 16 19 C -0.16 -3.90 10.03 22.31 0.22 -3.67 16 20 C 0.07 2.36 7.25 22.38 0.16 2.52 16 21 F -0.15 -5.12 16.19 44.97 0.73 -4.39 16 22 H 0.06 1.89 7.39 -2.39 -0.02 1.87 16 23 H 0.06 2.06 7.56 -2.39 -0.02 2.04 16 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.40 20.13 7.32 -92.70 -0.68 19.45 16 26 H 0.28 14.24 8.31 -92.72 -0.77 13.47 16 27 H 0.12 4.03 7.52 -2.91 -0.02 4.01 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -67.96 268.32 5.31 -62.65 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.49 Total: 27.24 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 3.42 Total: -13.96 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.31 Total: -81.61 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.05 Total: -35.22 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.73 Total: -4.39 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.96 5.31 -62.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108992866.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.272 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds