Wall clock time and date at job start Sun Mar 29 2020 22:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.53785 * 2 1 4 4 C 1.54226 * 110.60577 * 237.14588 * 2 1 3 5 5 C 1.51308 * 103.55679 * 241.32953 * 4 2 1 6 6 O 1.21227 * 125.39954 * 180.02562 * 5 4 2 7 7 N 1.33880 * 109.20627 * 359.97438 * 5 4 2 8 8 C 1.46506 * 122.76291 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46744 * 93.61700 * 8 7 5 10 10 C 1.50699 * 115.54819 * 173.82959 * 9 8 7 11 11 H 1.08001 * 120.00449 * 219.57489 * 10 9 8 12 12 C 1.37881 * 119.99627 * 39.84886 * 10 9 8 13 13 N 1.31515 * 120.00273 * 355.29416 * 12 10 9 14 14 Si 1.86806 * 119.99770 * 175.29327 * 12 10 9 15 15 H 1.48496 * 109.47262 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47149 * 120.00071 * 14 12 10 17 17 H 1.48500 * 109.47075 * 239.99934 * 14 12 10 18 18 C 1.52998 * 117.52221 * 319.53548 * 9 8 7 19 19 C 1.52994 * 117.49718 * 28.16789 * 9 8 7 20 20 C 1.33875 * 114.47418 * 0.27573 * 7 5 4 21 21 O 1.21226 * 125.39037 * 179.70790 * 20 7 5 22 22 H 1.08990 * 109.47107 * 182.85362 * 1 2 3 23 23 H 1.09002 * 109.46789 * 302.85244 * 1 2 3 24 24 H 1.08993 * 109.46700 * 62.84971 * 1 2 3 25 25 H 1.09003 * 110.60341 * 122.81144 * 4 2 1 26 26 H 1.08992 * 110.73856 * 359.91154 * 4 2 1 27 27 H 1.09004 * 109.46661 * 333.62205 * 8 7 5 28 28 H 1.08998 * 109.46935 * 213.62328 * 8 7 5 29 29 H 0.96997 * 120.00145 * 185.00152 * 13 12 10 30 30 H 1.08990 * 117.49968 * 214.96960 * 18 9 8 31 31 H 1.08998 * 117.49867 * 359.97438 * 18 9 8 32 32 H 1.08999 * 117.50287 * 359.97362 * 19 9 8 33 33 H 1.09001 * 117.50017 * 144.99388 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0728 -0.7831 -1.2127 5 6 2.8582 -1.9127 -0.5828 6 8 3.4571 -2.7749 -1.1889 7 7 2.7878 -1.8083 0.7501 8 6 3.4454 -2.7542 1.6552 9 6 4.8252 -2.2165 2.0400 10 6 5.5651 -3.0128 3.0838 11 1 6.1331 -2.5043 3.8488 12 6 5.5215 -4.3907 3.0588 13 7 4.7608 -5.0087 2.1819 14 14 6.5430 -5.3796 4.2704 15 1 7.3073 -4.4540 5.1447 16 1 5.6462 -6.2207 5.1032 17 1 7.4881 -6.2503 3.5261 18 6 5.6548 -1.5478 0.9421 19 6 5.0161 -0.6985 2.0428 20 6 2.0618 -0.7721 1.1877 21 8 1.8638 -0.4952 2.3511 22 1 -0.3633 -1.0263 0.0512 23 1 -0.3633 0.5575 0.8633 24 1 -0.3632 0.4689 -0.9144 25 1 2.7253 -0.1520 -1.8161 26 1 1.2546 -1.1751 -1.8167 27 1 3.5568 -3.7169 1.1562 28 1 2.8403 -2.8782 2.5532 29 1 4.6735 -5.9743 2.2107 30 1 6.7357 -1.6839 0.9746 31 1 5.2179 -1.4912 -0.0549 32 1 4.1590 -0.0829 1.7702 33 1 5.6770 -0.2758 2.7996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115112381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:27 Heat of formation + Delta-G solvation = -39.331241 kcal Electronic energy + Delta-G solvation = -17604.154464 eV Core-core repulsion = 14824.131971 eV Total energy + Delta-G solvation = -2780.022494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53416 -38.01026 -36.64066 -35.38143 -33.36978 -32.20195 -28.52758 -26.41591 -25.37926 -24.14949 -21.60586 -20.89550 -19.82828 -18.44445 -16.98512 -16.47045 -15.91489 -15.68518 -14.76594 -14.38654 -14.15490 -13.85855 -13.51605 -13.29801 -12.95357 -12.37050 -12.25369 -11.96979 -11.59372 -11.53734 -11.19667 -11.01562 -10.74302 -10.51399 -10.24359 -10.06369 -9.88805 -9.44210 -9.03582 -8.91907 -8.54142 -8.17399 -6.10211 -4.18337 1.99869 3.19861 3.25954 3.28610 3.33789 3.37609 4.27816 4.32466 4.52978 4.60841 4.87561 4.97062 5.25579 5.47629 5.48726 5.50390 5.71302 5.82937 6.02010 6.04951 6.23615 6.36623 6.42138 6.67419 6.78862 6.92517 7.09569 7.29491 7.55545 7.65618 7.87656 7.94414 8.25365 8.44240 8.81315 9.44131 10.90973 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036731 B = 0.007996 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.123766 B = 3500.888255 C = 3649.594630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.133 4.133 3 H 0.117 0.883 4 C -0.158 4.158 5 C 0.521 3.479 6 O -0.476 6.476 7 N -0.566 5.566 8 C 0.134 3.866 9 C 0.045 3.955 10 C -0.485 4.485 11 H 0.066 0.934 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.202 4.202 19 C -0.208 4.208 20 C 0.524 3.476 21 O -0.482 6.482 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.075 0.925 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 8.025 -6.320 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 H 0.135 0.865 4 C -0.198 4.198 5 C 0.309 3.691 6 O -0.348 6.348 7 N -0.307 5.307 8 C 0.016 3.984 9 C 0.044 3.956 10 C -0.523 4.523 11 H 0.084 0.916 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.240 4.240 19 C -0.245 4.245 20 C 0.312 3.688 21 O -0.355 6.355 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.460 7.452 -6.076 12.170 hybrid contribution 0.643 -0.415 0.583 0.962 sum -6.817 7.037 -5.493 11.232 Atomic orbital electron populations 1.21653 0.91431 1.02973 1.03082 1.22087 0.98875 1.01319 0.93141 0.86493 1.22614 1.01776 0.96920 0.98517 1.20609 0.80038 0.86035 0.82467 1.90775 1.40888 1.36655 1.66467 1.47196 1.45744 1.28056 1.09743 1.22111 0.91671 0.92176 0.92462 1.19272 0.92180 0.88526 0.95639 1.20576 1.29742 0.90488 1.11471 0.91598 1.25053 0.95382 0.97754 0.95383 1.69663 1.38432 1.09469 1.34819 0.86322 0.80109 0.79836 0.80531 1.19643 1.20783 1.20759 1.22996 0.99300 1.08452 0.93287 1.22896 1.02132 0.96833 1.02626 1.20621 0.77257 0.80752 0.90192 1.90731 1.57042 1.68542 1.19152 0.92053 0.91172 0.91087 0.86878 0.86778 0.84112 0.90629 0.92410 0.90396 0.91840 0.91871 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.10 37.16 0.34 -0.94 16 2 C -0.13 -1.60 3.69 -90.83 -0.34 -1.93 16 3 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.16 -1.87 6.67 -26.94 -0.18 -2.05 16 5 C 0.52 9.54 6.56 -11.09 -0.07 9.46 16 6 O -0.48 -10.50 16.88 5.60 0.09 -10.40 16 7 N -0.57 -11.36 1.85 -115.34 -0.21 -11.58 16 8 C 0.13 3.29 4.80 -4.04 -0.02 3.27 16 9 C 0.04 1.16 2.40 -155.66 -0.37 0.79 16 10 C -0.48 -13.48 9.03 -34.44 -0.31 -13.79 16 11 H 0.07 1.82 7.82 -52.49 -0.41 1.41 16 12 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 13 N -0.89 -24.70 10.50 55.43 0.58 -24.12 16 14 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.20 -4.86 9.63 -26.73 -0.26 -5.11 16 19 C -0.21 -4.81 9.52 -26.73 -0.25 -5.06 16 20 C 0.52 9.41 5.35 -11.09 -0.06 9.35 16 21 O -0.48 -10.16 17.06 5.60 0.10 -10.07 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.11 1.06 7.75 -51.93 -0.40 0.66 16 27 H 0.14 3.81 5.56 -51.93 -0.29 3.53 16 28 H 0.08 1.94 7.91 -51.93 -0.41 1.53 16 29 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 30 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 31 H 0.06 1.47 5.90 -51.93 -0.31 1.17 16 32 H 0.06 1.38 5.29 -51.93 -0.27 1.10 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -31.42 274.82 -6.13 -37.55 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.19 Total: 2.69 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.62 Total: -4.29 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.37 Total: -35.70 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.19 Total: -20.47 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.42 -6.13 -37.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115112381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.782 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds