Wall clock time and date at job start Sun Mar 29 2020 22:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.53785 * 2 1 4 4 C 1.54226 * 110.60577 * 237.14588 * 2 1 3 5 5 C 1.51308 * 103.55679 * 241.32953 * 4 2 1 6 6 O 1.21227 * 125.39954 * 180.02562 * 5 4 2 7 7 N 1.33880 * 109.20627 * 359.97438 * 5 4 2 8 8 C 1.46506 * 122.76291 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46744 * 93.61700 * 8 7 5 10 10 C 1.50699 * 115.54819 * 173.82959 * 9 8 7 11 11 H 1.08001 * 120.00449 * 219.57489 * 10 9 8 12 12 C 1.37881 * 119.99627 * 39.84886 * 10 9 8 13 13 N 1.31515 * 120.00273 * 355.29416 * 12 10 9 14 14 Si 1.86806 * 119.99770 * 175.29327 * 12 10 9 15 15 H 1.48496 * 109.47262 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47149 * 120.00071 * 14 12 10 17 17 H 1.48500 * 109.47075 * 239.99934 * 14 12 10 18 18 C 1.52998 * 117.52221 * 319.53548 * 9 8 7 19 19 C 1.52994 * 117.49718 * 28.16789 * 9 8 7 20 20 C 1.33875 * 114.47418 * 0.27573 * 7 5 4 21 21 O 1.21226 * 125.39037 * 179.70790 * 20 7 5 22 22 H 1.08990 * 109.47107 * 182.85362 * 1 2 3 23 23 H 1.09002 * 109.46789 * 302.85244 * 1 2 3 24 24 H 1.08993 * 109.46700 * 62.84971 * 1 2 3 25 25 H 1.09003 * 110.60341 * 122.81144 * 4 2 1 26 26 H 1.08992 * 110.73856 * 359.91154 * 4 2 1 27 27 H 1.09004 * 109.46661 * 333.62205 * 8 7 5 28 28 H 1.08998 * 109.46935 * 213.62328 * 8 7 5 29 29 H 0.96997 * 120.00145 * 185.00152 * 13 12 10 30 30 H 1.08990 * 117.49968 * 214.96960 * 18 9 8 31 31 H 1.08998 * 117.49867 * 359.97438 * 18 9 8 32 32 H 1.08999 * 117.50287 * 359.97362 * 19 9 8 33 33 H 1.09001 * 117.50017 * 144.99388 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0728 -0.7831 -1.2127 5 6 2.8582 -1.9127 -0.5828 6 8 3.4571 -2.7749 -1.1889 7 7 2.7878 -1.8083 0.7501 8 6 3.4454 -2.7542 1.6552 9 6 4.8252 -2.2165 2.0400 10 6 5.5651 -3.0128 3.0838 11 1 6.1331 -2.5043 3.8488 12 6 5.5215 -4.3907 3.0588 13 7 4.7608 -5.0087 2.1819 14 14 6.5430 -5.3796 4.2704 15 1 7.3073 -4.4540 5.1447 16 1 5.6462 -6.2207 5.1032 17 1 7.4881 -6.2503 3.5261 18 6 5.6548 -1.5478 0.9421 19 6 5.0161 -0.6985 2.0428 20 6 2.0618 -0.7721 1.1877 21 8 1.8638 -0.4952 2.3511 22 1 -0.3633 -1.0263 0.0512 23 1 -0.3633 0.5575 0.8633 24 1 -0.3632 0.4689 -0.9144 25 1 2.7253 -0.1520 -1.8161 26 1 1.2546 -1.1751 -1.8167 27 1 3.5568 -3.7169 1.1562 28 1 2.8403 -2.8782 2.5532 29 1 4.6735 -5.9743 2.2107 30 1 6.7357 -1.6839 0.9746 31 1 5.2179 -1.4912 -0.0549 32 1 4.1590 -0.0829 1.7702 33 1 5.6770 -0.2758 2.7996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115112381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:27 Heat of formation + Delta-G solvation = -59.368570 kcal Electronic energy + Delta-G solvation = -17605.023348 eV Core-core repulsion = 14824.131971 eV Total energy + Delta-G solvation = -2780.891378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.97338 -39.52667 -38.48982 -36.81564 -34.73769 -34.25276 -29.73143 -28.14968 -27.25083 -25.44376 -23.23309 -22.43273 -21.53391 -20.06681 -18.72153 -18.06112 -17.52171 -17.19911 -16.64867 -15.77304 -15.70931 -15.27885 -15.00703 -14.62600 -14.43582 -14.01457 -13.62737 -13.51034 -13.21129 -12.90241 -12.73062 -12.53194 -12.35779 -12.19280 -12.04795 -11.89062 -11.36665 -11.02674 -10.88797 -10.84964 -10.38797 -10.17997 -8.16633 -6.34122 0.59576 1.38102 1.39832 1.52472 1.78603 1.89101 2.35891 2.91737 3.20367 3.33073 3.46440 3.59938 4.00780 4.12976 4.35289 4.40552 4.43041 4.59518 4.69226 4.73975 4.77627 4.83948 4.98737 5.01449 5.04543 5.16667 5.32759 5.37522 5.53311 5.77177 6.13086 6.22702 6.52304 6.66779 6.92658 7.31344 8.82543 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036731 B = 0.007996 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.123766 B = 3500.888255 C = 3649.594630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.150 0.850 4 C -0.136 4.136 5 C 0.509 3.491 6 O -0.524 6.524 7 N -0.579 5.579 8 C 0.151 3.849 9 C 0.010 3.990 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.021 3.979 13 N -0.909 5.909 14 Si 0.970 3.030 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.278 1.278 18 C -0.194 4.194 19 C -0.186 4.186 20 C 0.513 3.487 21 O -0.523 6.523 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.267 0.733 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 9.806 -7.674 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.167 0.833 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.399 6.399 7 N -0.320 5.320 8 C 0.030 3.970 9 C 0.009 3.991 10 C -0.552 4.552 11 H 0.076 0.924 12 C -0.179 4.179 13 N -0.547 5.547 14 Si 0.794 3.206 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.231 4.231 19 C -0.223 4.223 20 C 0.304 3.696 21 O -0.397 6.397 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.131 0.869 25 H 0.166 0.834 26 H 0.168 0.832 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.317 9.270 -7.451 14.513 hybrid contribution 0.873 -0.967 1.012 1.649 sum -7.444 8.303 -6.439 12.877 Atomic orbital electron populations 1.21730 0.89159 1.02937 1.05084 1.22222 1.00411 1.01573 0.89289 0.83283 1.22757 1.02182 0.94149 0.98418 1.21843 0.79534 0.86901 0.81664 1.90748 1.43132 1.38984 1.67025 1.47348 1.46107 1.28178 1.10330 1.21378 0.91290 0.92454 0.91883 1.19420 0.93005 0.90139 0.96540 1.20847 1.30603 0.91474 1.12237 0.92411 1.25838 0.96258 0.98603 0.97160 1.69840 1.39210 1.09654 1.35968 0.85327 0.78580 0.78266 0.78415 1.19237 1.19990 1.20335 1.22897 0.98711 1.08067 0.93472 1.22853 1.02185 0.95429 1.01867 1.21805 0.76096 0.80231 0.91475 1.90705 1.58203 1.69404 1.21421 0.92949 0.91587 0.86915 0.83417 0.83226 0.87124 0.93459 0.92343 0.91001 0.91091 0.90326 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.10 71.98 0.65 -1.28 16 2 C -0.11 -2.26 3.69 -10.93 -0.04 -2.30 16 3 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.14 -2.59 6.67 30.46 0.20 -2.38 16 5 C 0.51 18.05 6.56 87.99 0.58 18.63 16 6 O -0.52 -23.22 16.88 -2.87 -0.05 -23.27 16 7 N -0.58 -23.25 1.85 -756.65 -1.40 -24.65 16 8 C 0.15 7.73 4.80 86.38 0.41 8.15 16 9 C 0.01 0.54 2.40 -52.93 -0.13 0.41 16 10 C -0.51 -29.48 9.03 25.60 0.23 -29.25 16 11 H 0.06 3.29 7.82 -2.91 -0.02 3.27 16 12 C 0.02 1.20 5.39 84.66 0.46 1.66 16 13 N -0.91 -52.52 10.50 21.45 0.23 -52.29 16 14 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 C -0.19 -9.35 9.63 30.59 0.29 -9.05 16 19 C -0.19 -8.61 9.52 30.59 0.29 -8.31 16 20 C 0.51 17.83 5.35 87.99 0.47 18.30 16 21 O -0.52 -22.04 17.06 -2.86 -0.05 -22.09 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.15 1.92 7.75 -2.39 -0.02 1.90 16 27 H 0.11 6.35 5.56 -2.38 -0.01 6.33 16 28 H 0.05 2.59 7.91 -2.39 -0.02 2.57 16 29 H 0.27 14.55 8.32 -92.71 -0.77 13.78 16 30 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.07 3.28 5.90 -2.39 -0.01 3.27 16 32 H 0.08 3.35 5.29 -2.39 -0.01 3.34 16 33 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -72.90 274.82 5.30 -67.60 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.11 Total: 13.96 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 3.43 Total: -5.45 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.17 Total: -76.95 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.10 Total: -45.35 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.90 5.30 -67.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115112381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.233 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds