Wall clock time and date at job start Sun Mar 29 2020 22:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78641 * 2 1 4 4 C 1.41390 * 106.83716 * 179.74969 * 3 2 1 5 5 C 1.34517 * 106.84069 * 0.36902 * 4 3 2 6 6 C 1.50700 * 125.78867 * 179.89319 * 5 4 3 7 7 H 1.08997 * 109.67693 * 20.22726 * 6 5 4 8 8 C 1.53291 * 109.67733 * 259.71449 * 6 5 4 9 9 O 1.42966 * 109.22272 * 187.97193 * 8 6 5 10 10 C 1.42959 * 114.16378 * 62.58072 * 9 8 6 11 11 C 1.53303 * 109.22538 * 297.42226 * 10 9 8 12 12 N 1.47149 * 109.68067 * 140.78790 * 6 5 4 13 13 C 1.36932 * 120.98422 * 350.27788 * 12 6 5 14 14 H 1.08004 * 120.00175 * 33.81447 * 13 12 6 15 15 C 1.38812 * 120.00020 * 213.81172 * 13 12 6 16 16 N 1.31617 * 119.99926 * 9.07886 * 15 13 12 17 17 Si 1.86802 * 120.00082 * 189.08213 * 15 13 12 18 18 H 1.48495 * 109.47245 * 93.53527 * 17 15 13 19 19 H 1.48494 * 109.47062 * 213.54027 * 17 15 13 20 20 H 1.48499 * 109.47033 * 333.53795 * 17 15 13 21 21 O 1.34301 * 125.79030 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47139 * 300.00183 * 1 2 3 24 24 H 1.09001 * 109.47287 * 60.00416 * 1 2 3 25 25 H 1.08000 * 126.58402 * 359.97438 * 3 2 1 26 26 H 1.07996 * 126.57580 * 180.23923 * 4 3 2 27 27 H 1.08997 * 109.51738 * 68.05082 * 8 6 5 28 28 H 1.08998 * 109.51686 * 307.89500 * 8 6 5 29 29 H 1.09009 * 109.51682 * 57.34387 * 10 9 8 30 30 H 1.08996 * 109.51463 * 177.49468 * 10 9 8 31 31 H 1.08998 * 109.68273 * 172.02933 * 11 10 9 32 32 H 1.08993 * 109.67587 * 292.57777 * 11 10 9 33 33 H 0.96998 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7122 0.0009 6 6 4.7706 -1.6378 0.0020 7 1 5.6504 -1.1046 0.3621 8 6 5.0250 -2.1531 -1.4191 9 8 6.0309 -3.1682 -1.3787 10 6 5.6657 -4.3242 -0.6210 11 6 5.4440 -3.9200 0.8411 12 7 4.4990 -2.7925 0.8728 13 6 3.3991 -2.8173 1.6881 14 1 2.4807 -2.3460 1.3705 15 6 3.4646 -3.4481 2.9229 16 7 4.6230 -3.8648 3.3884 17 14 1.9085 -3.7058 3.9238 18 1 1.3474 -5.0488 3.6296 19 1 2.2289 -3.6090 5.3705 20 1 0.9122 -2.6641 3.5667 21 8 2.2924 -1.0894 0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9665 2.1205 -0.0004 26 1 4.5211 1.2434 0.0111 27 1 5.3629 -1.3307 -2.0496 28 1 4.1035 -2.5698 -1.8258 29 1 4.7464 -4.7487 -1.0247 30 1 6.4644 -5.0637 -0.6772 31 1 5.0299 -4.7619 1.3960 32 1 6.3918 -3.6173 1.2859 33 1 4.6687 -4.3059 4.2510 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116893879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:45 Heat of formation + Delta-G solvation = -1.686938 kcal Electronic energy + Delta-G solvation = -17609.210570 eV Core-core repulsion = 14830.820456 eV Total energy + Delta-G solvation = -2778.390114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97086 -38.28718 -34.57616 -32.60742 -32.45444 -30.82603 -30.01893 -27.01119 -25.67618 -23.38120 -22.70014 -21.09083 -20.04278 -19.28798 -17.27632 -16.11418 -15.44385 -15.20137 -14.92147 -14.46197 -14.16061 -13.74092 -13.42931 -12.91970 -12.82108 -12.65429 -12.63442 -12.19746 -11.67067 -11.36622 -11.03796 -10.91971 -10.81155 -10.58007 -10.22269 -9.97707 -9.65563 -9.21105 -9.03510 -8.52127 -7.64012 -6.64920 -5.81941 -3.34070 2.35209 3.17291 3.34740 3.41270 3.43546 3.58089 4.42833 4.53181 5.15707 5.25201 5.37561 5.46395 5.57597 5.68599 5.69715 5.78255 5.82667 5.94933 6.03291 6.17989 6.31047 6.35417 6.38471 6.51185 6.65547 6.74189 7.05002 7.14042 7.49966 7.85034 7.86257 7.94976 8.39336 9.16261 9.72618 10.32397 11.26477 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.014059 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.193629 B = 1991.188707 C = 3327.747845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.036 4.036 3 C -0.216 4.216 4 C -0.228 4.228 5 C 0.042 3.958 6 C 0.208 3.792 7 H 0.065 0.935 8 C 0.057 3.943 9 O -0.391 6.391 10 C 0.033 3.967 11 C 0.145 3.855 12 N -0.589 5.589 13 C -0.258 4.258 14 H 0.085 0.915 15 C 0.008 3.992 16 N -0.905 5.905 17 Si 0.903 3.097 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.277 1.277 21 O -0.143 6.143 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 5.166 -7.594 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.235 4.235 4 C -0.248 4.248 5 C -0.009 4.009 6 C 0.102 3.898 7 H 0.082 0.918 8 C -0.022 4.022 9 O -0.309 6.309 10 C -0.045 4.045 11 C 0.020 3.980 12 N -0.314 5.314 13 C -0.387 4.387 14 H 0.102 0.898 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.202 1.202 21 O -0.039 6.039 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.417 4.790 -7.505 9.536 hybrid contribution -0.873 0.093 0.976 1.313 sum -4.290 4.883 -6.529 9.213 Atomic orbital electron populations 1.20192 0.86148 1.03636 1.02592 1.22380 0.93978 0.85195 1.07154 1.21335 0.92841 0.98663 1.10647 1.21387 0.97772 0.93790 1.11860 1.22326 0.82990 0.93626 1.01988 1.19916 0.89541 0.87953 0.92427 0.91769 1.22953 0.91784 0.91012 0.96404 1.87804 1.41818 1.28461 1.72844 1.23393 0.99208 0.86953 0.94900 1.21427 0.93298 0.92223 0.91031 1.44081 1.27739 1.12675 1.46914 1.19632 0.89390 1.34409 0.95228 0.89764 1.25270 0.96476 1.01191 0.96139 1.69976 1.22687 1.42914 1.19270 0.86260 0.82873 0.78156 0.79464 1.21305 1.21603 1.20244 1.84303 1.16301 1.33484 1.69772 0.90853 0.90352 0.90460 0.84446 0.84182 0.89633 0.93378 0.93968 0.89962 0.89032 0.95025 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.42 36.00 0.38 -0.55 16 2 C -0.04 -0.66 7.32 -35.62 -0.26 -0.92 16 3 C -0.22 -3.69 10.81 -39.70 -0.43 -4.12 16 4 C -0.23 -4.26 10.80 -39.70 -0.43 -4.69 16 5 C 0.04 0.90 5.37 -35.62 -0.19 0.70 16 6 C 0.21 4.59 3.53 -68.58 -0.24 4.35 16 7 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 8 C 0.06 1.10 6.27 37.31 0.23 1.33 16 9 O -0.39 -7.93 10.74 -35.23 -0.38 -8.31 16 10 C 0.03 0.67 6.98 37.31 0.26 0.93 16 11 C 0.15 3.51 5.36 -3.53 -0.02 3.49 16 12 N -0.59 -15.06 3.02 -165.62 -0.50 -15.56 16 13 C -0.26 -7.15 8.72 -15.06 -0.13 -7.28 16 14 H 0.09 2.36 4.79 -52.48 -0.25 2.10 16 15 C 0.01 0.23 5.08 -17.43 -0.09 0.14 16 16 N -0.90 -26.31 11.24 55.49 0.62 -25.68 16 17 Si 0.90 22.09 29.56 -169.99 -5.03 17.07 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 O -0.14 -3.12 7.72 5.71 0.04 -3.08 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 26 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.09 2.40 6.49 -51.93 -0.34 2.06 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 273.24 15.07 4.12 4.12 Total: -1.00 -31.08 273.24 -6.41 -37.49 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.37 Total: 0.57 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.92 Total: -6.61 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.12 Total: -41.24 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.33 Total: -11.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.08 -6.41 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116893879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.804 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds