Wall clock time and date at job start Sun Mar 29 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34517 * 125.78641 * 2 1 4 4 C 1.41390 * 106.83716 * 179.74969 * 3 2 1 5 5 C 1.34517 * 106.84069 * 0.36902 * 4 3 2 6 6 C 1.50700 * 125.78867 * 179.89319 * 5 4 3 7 7 H 1.08997 * 109.67693 * 20.22726 * 6 5 4 8 8 C 1.53291 * 109.67733 * 259.71449 * 6 5 4 9 9 O 1.42966 * 109.22272 * 187.97193 * 8 6 5 10 10 C 1.42959 * 114.16378 * 62.58072 * 9 8 6 11 11 C 1.53303 * 109.22538 * 297.42226 * 10 9 8 12 12 N 1.47149 * 109.68067 * 140.78790 * 6 5 4 13 13 C 1.36932 * 120.98422 * 350.27788 * 12 6 5 14 14 H 1.08004 * 120.00175 * 33.81447 * 13 12 6 15 15 C 1.38812 * 120.00020 * 213.81172 * 13 12 6 16 16 N 1.31617 * 119.99926 * 9.07886 * 15 13 12 17 17 Si 1.86802 * 120.00082 * 189.08213 * 15 13 12 18 18 H 1.48495 * 109.47245 * 93.53527 * 17 15 13 19 19 H 1.48494 * 109.47062 * 213.54027 * 17 15 13 20 20 H 1.48499 * 109.47033 * 333.53795 * 17 15 13 21 21 O 1.34301 * 125.79030 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47139 * 300.00183 * 1 2 3 24 24 H 1.09001 * 109.47287 * 60.00416 * 1 2 3 25 25 H 1.08000 * 126.58402 * 359.97438 * 3 2 1 26 26 H 1.07996 * 126.57580 * 180.23923 * 4 3 2 27 27 H 1.08997 * 109.51738 * 68.05082 * 8 6 5 28 28 H 1.08998 * 109.51686 * 307.89500 * 8 6 5 29 29 H 1.09009 * 109.51682 * 57.34387 * 10 9 8 30 30 H 1.08996 * 109.51463 * 177.49468 * 10 9 8 31 31 H 1.08998 * 109.68273 * 172.02933 * 11 10 9 32 32 H 1.08993 * 109.67587 * 292.57777 * 11 10 9 33 33 H 0.96998 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7122 0.0009 6 6 4.7706 -1.6378 0.0020 7 1 5.6504 -1.1046 0.3621 8 6 5.0250 -2.1531 -1.4191 9 8 6.0309 -3.1682 -1.3787 10 6 5.6657 -4.3242 -0.6210 11 6 5.4440 -3.9200 0.8411 12 7 4.4990 -2.7925 0.8728 13 6 3.3991 -2.8173 1.6881 14 1 2.4807 -2.3460 1.3705 15 6 3.4646 -3.4481 2.9229 16 7 4.6230 -3.8648 3.3884 17 14 1.9085 -3.7058 3.9238 18 1 1.3474 -5.0488 3.6296 19 1 2.2289 -3.6090 5.3705 20 1 0.9122 -2.6641 3.5667 21 8 2.2924 -1.0894 0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.9665 2.1205 -0.0004 26 1 4.5211 1.2434 0.0111 27 1 5.3629 -1.3307 -2.0496 28 1 4.1035 -2.5698 -1.8258 29 1 4.7464 -4.7487 -1.0247 30 1 6.4644 -5.0637 -0.6772 31 1 5.0299 -4.7619 1.3960 32 1 6.3918 -3.6173 1.2859 33 1 4.6687 -4.3059 4.2510 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116893879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:44 Heat of formation + Delta-G solvation = -21.591916 kcal Electronic energy + Delta-G solvation = -17610.073715 eV Core-core repulsion = 14830.820456 eV Total energy + Delta-G solvation = -2779.253259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.43745 -39.97453 -36.41842 -34.24474 -33.91884 -32.65727 -31.49425 -28.86762 -27.11027 -25.29524 -24.31235 -22.56207 -21.70948 -20.85795 -19.14913 -17.77799 -16.97819 -16.91699 -16.54516 -16.28545 -15.65688 -15.54976 -15.18299 -14.65893 -14.43367 -13.88568 -13.74466 -13.61834 -13.19757 -12.99029 -12.77581 -12.74745 -12.56744 -12.33806 -12.13803 -11.83952 -11.40373 -10.81709 -10.68960 -10.55160 -9.08447 -8.65368 -7.91255 -5.46383 0.89638 1.40323 1.40588 1.50357 1.77715 2.17043 2.45422 2.95224 3.25382 3.43417 3.84348 4.05382 4.17887 4.22075 4.29256 4.42189 4.56037 4.58015 4.60144 4.75624 4.82343 4.89091 4.91198 4.98310 5.13100 5.22005 5.34388 5.53165 5.75178 5.82336 6.20967 6.35780 6.44602 7.09216 7.70020 8.27327 9.14724 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.014059 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.193629 B = 1991.188707 C = 3327.747845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.218 4.218 4 C -0.220 4.220 5 C 0.001 3.999 6 C 0.204 3.796 7 H 0.055 0.945 8 C 0.065 3.935 9 O -0.392 6.392 10 C 0.046 3.954 11 C 0.149 3.851 12 N -0.607 5.607 13 C -0.260 4.260 14 H 0.083 0.917 15 C -0.046 4.046 16 N -0.936 5.936 17 Si 0.962 3.038 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.271 1.271 21 O -0.175 6.175 22 H 0.067 0.933 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.173 0.827 26 H 0.160 0.840 27 H 0.119 0.881 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.008 0.992 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 6.499 -8.700 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.237 4.237 4 C -0.240 4.240 5 C -0.049 4.049 6 C 0.098 3.902 7 H 0.073 0.927 8 C -0.013 4.013 9 O -0.311 6.311 10 C -0.031 4.031 11 C 0.024 3.976 12 N -0.333 5.333 13 C -0.389 4.389 14 H 0.100 0.900 15 C -0.242 4.242 16 N -0.581 5.581 17 Si 0.790 3.210 18 H -0.208 1.208 19 H -0.219 1.219 20 H -0.195 1.195 21 O -0.072 6.072 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.128 0.872 25 H 0.190 0.810 26 H 0.178 0.822 27 H 0.137 0.863 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.650 6.138 -8.641 11.574 hybrid contribution -0.513 -0.219 1.272 1.389 sum -5.163 5.919 -7.369 10.770 Atomic orbital electron populations 1.20423 0.83037 1.04091 1.04965 1.23357 0.95860 0.84597 1.05802 1.21742 0.91827 1.00150 1.09947 1.21774 0.99469 0.93052 1.09700 1.22257 0.82880 0.94380 1.05421 1.20012 0.90071 0.87094 0.93001 0.92727 1.22994 0.91627 0.91561 0.95158 1.87805 1.42284 1.28633 1.72382 1.23259 1.00610 0.87467 0.91802 1.21279 0.91698 0.91186 0.93442 1.44328 1.27387 1.14353 1.47237 1.19881 0.90260 1.33350 0.95422 0.89982 1.25990 0.99131 1.01752 0.97313 1.70128 1.24397 1.44177 1.19432 0.85335 0.79801 0.78234 0.77671 1.20760 1.21900 1.19534 1.84217 1.16813 1.35480 1.70667 0.91381 0.88662 0.87215 0.80995 0.82212 0.86271 0.93784 0.93685 0.86880 0.91707 0.97390 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.42 71.24 0.74 -0.89 16 2 C -0.05 -1.57 7.32 24.83 0.18 -1.39 16 3 C -0.22 -6.84 10.81 22.19 0.24 -6.60 16 4 C -0.22 -7.83 10.80 22.19 0.24 -7.59 16 5 C 0.00 0.05 5.37 24.83 0.13 0.18 16 6 C 0.20 9.01 3.53 44.22 0.16 9.16 16 7 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 8 C 0.06 2.42 6.27 72.08 0.45 2.87 16 9 O -0.39 -15.40 10.74 -148.98 -1.60 -17.00 16 10 C 0.05 1.83 6.98 72.08 0.50 2.33 16 11 C 0.15 7.38 5.36 86.36 0.46 7.84 16 12 N -0.61 -31.66 3.02 -677.89 -2.05 -33.70 16 13 C -0.26 -14.65 8.72 84.03 0.73 -13.92 16 14 H 0.08 4.64 4.79 -2.91 -0.01 4.63 16 15 C -0.05 -2.65 5.08 84.86 0.43 -2.22 16 16 N -0.94 -56.03 11.24 21.65 0.24 -55.79 16 17 Si 0.96 45.98 29.56 68.60 2.03 48.00 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 O -0.18 -7.52 7.72 -2.50 -0.02 -7.54 16 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.16 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.06 3.52 6.49 -2.39 -0.02 3.51 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -67.87 273.24 3.98 -63.89 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.10 Total: 12.35 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 4.28 Total: -10.21 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -1.80 Total: -89.49 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.62 Total: -24.55 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -67.87 3.98 -63.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116893879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -67.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds