Wall clock time and date at job start Sun Mar 29 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.47017 * 110.99979 * 66.04631 * 10 9 7 12 12 C 1.53097 * 109.26114 * 182.38895 * 11 10 9 13 13 O 1.43015 * 109.25729 * 303.15818 * 12 11 10 14 14 C 1.43011 * 113.74287 * 58.66733 * 13 12 11 15 15 H 1.09002 * 109.50785 * 61.30798 * 14 13 12 16 16 C 1.50700 * 109.50464 * 181.39313 * 14 13 12 17 17 C 1.34508 * 125.78762 * 219.99276 * 16 14 13 18 18 C 1.41383 * 106.84253 * 180.02562 * 17 16 14 19 19 C 1.34513 * 106.84019 * 0.02562 * 18 17 16 20 20 O 1.34304 * 125.78796 * 39.69808 * 16 14 13 21 21 C 1.47007 * 111.00177 * 189.68100 * 10 9 7 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09000 * 109.50700 * 302.32682 * 11 10 9 26 26 H 1.09007 * 109.50617 * 62.45609 * 11 10 9 27 27 H 1.09010 * 109.50310 * 63.08808 * 12 11 10 28 28 H 1.08997 * 109.50631 * 183.21415 * 12 11 10 29 29 H 1.08004 * 126.58375 * 359.97219 * 17 16 14 30 30 H 1.07997 * 126.58522 * 179.97438 * 18 17 16 31 31 H 1.08001 * 125.79449 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.50639 * 297.54367 * 21 10 9 33 33 H 1.08997 * 109.50784 * 57.67503 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9716 -3.6540 1.2538 12 6 3.9929 -4.7926 1.1873 13 8 3.3112 -6.0234 0.9313 14 6 2.5557 -6.0215 -0.2830 15 1 3.2254 -5.8623 -1.1281 16 6 1.8527 -7.3451 -0.4404 17 6 1.7104 -8.0283 -1.5903 18 6 0.9916 -9.2058 -1.2809 19 6 0.7372 -9.1715 0.0395 20 8 1.2669 -8.0453 0.5446 21 6 1.5198 -4.8953 -0.2313 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.4917 -2.7061 1.3918 26 1 2.2927 -3.8225 2.0898 27 1 4.7044 -4.5969 0.3849 28 1 4.5239 -4.8611 2.1367 29 1 2.0744 -7.7336 -2.5635 30 1 0.7016 -9.9833 -1.9721 31 1 0.2029 -9.9246 0.5997 32 1 0.8177 -5.0836 0.5809 33 1 0.9801 -4.8536 -1.1774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120978824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:30 Heat of formation + Delta-G solvation = -21.139816 kcal Electronic energy + Delta-G solvation = -16774.699810 eV Core-core repulsion = 13995.466156 eV Total energy + Delta-G solvation = -2779.233654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.48200 -39.04470 -35.25464 -33.07977 -32.50782 -31.92621 -28.81349 -27.94220 -25.21758 -23.64319 -22.15728 -21.65098 -20.34989 -19.74324 -17.51238 -16.51859 -15.96846 -15.73897 -15.63195 -14.72646 -14.50889 -14.34275 -13.85096 -13.48304 -12.94623 -12.75035 -12.59571 -12.14208 -11.98453 -11.34848 -11.22100 -10.93953 -10.83038 -10.62635 -10.33009 -9.99271 -9.86940 -9.46218 -9.16984 -8.48229 -8.37861 -7.41121 -6.07296 -4.09582 1.77179 2.63832 3.07492 3.29656 3.35664 3.38695 3.90608 4.37105 4.69253 4.95026 5.05298 5.14672 5.27154 5.29793 5.37794 5.58118 5.71325 5.75169 5.88532 5.91953 5.94229 6.13949 6.23960 6.41634 6.51624 6.54274 7.12333 7.20173 7.25767 7.42067 7.70552 7.96444 8.07352 8.43393 8.97216 9.54898 11.03652 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.005398 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.021340 B = 5185.405294 C = 5522.919747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.534 5.534 11 C 0.025 3.975 12 C 0.063 3.937 13 O -0.383 6.383 14 C 0.175 3.825 15 H 0.095 0.905 16 C 0.010 3.990 17 C -0.206 4.206 18 C -0.215 4.215 19 C -0.046 4.046 20 O -0.162 6.162 21 C 0.028 3.972 22 H 0.262 0.738 23 H 0.033 0.967 24 H -0.007 1.007 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.201 0.799 32 H 0.036 0.964 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -14.843 -0.547 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.259 5.259 11 C -0.103 4.103 12 C -0.013 4.013 13 O -0.302 6.302 14 C 0.117 3.883 15 H 0.113 0.887 16 C -0.042 4.042 17 C -0.225 4.225 18 C -0.234 4.234 19 C -0.114 4.114 20 O -0.058 6.058 21 C -0.101 4.101 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.217 0.783 32 H 0.054 0.946 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.981 -14.689 -0.499 15.227 hybrid contribution -0.388 0.881 0.259 0.997 sum 3.593 -13.808 -0.239 14.270 Atomic orbital electron populations 1.69960 1.06110 1.26905 1.50718 1.24997 0.94873 0.99380 0.95305 0.86469 0.79657 0.82951 0.78163 1.20574 1.21289 1.19819 1.21119 0.93481 0.89780 1.50486 0.91777 1.19757 0.89986 0.87015 0.96384 1.62385 1.28118 1.02232 1.33167 1.22667 0.96640 0.99423 0.91619 1.22802 0.94168 0.83163 1.01194 1.87968 1.65527 1.36024 1.40725 1.20548 0.91745 0.86832 0.89185 0.88743 1.22229 1.00311 0.95075 0.86546 1.21526 1.06096 0.95956 0.98954 1.21776 1.05201 1.00385 0.96082 1.24062 1.02807 0.89863 0.94665 1.84100 1.55648 1.28822 1.37183 1.22672 0.95134 0.90352 1.01965 0.92828 0.94942 0.98873 0.88574 0.94980 0.92354 0.88763 0.83223 0.83478 0.78280 0.94569 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -14.14 8.48 -34.44 -0.29 -14.43 16 8 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 9 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 10 N -0.53 -11.60 4.72 -235.75 -1.11 -12.71 16 11 C 0.03 0.49 5.46 -3.71 -0.02 0.47 16 12 C 0.06 1.02 7.01 37.21 0.26 1.28 16 13 O -0.38 -6.74 10.45 -37.41 -0.39 -7.13 16 14 C 0.18 2.92 3.27 -27.83 -0.09 2.83 16 15 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 16 C 0.01 0.15 6.21 -35.63 -0.22 -0.07 16 17 C -0.21 -2.77 10.80 -39.70 -0.43 -3.20 16 18 C -0.22 -2.53 10.91 -39.70 -0.43 -2.97 16 19 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 20 O -0.16 -2.57 10.65 3.50 0.04 -2.54 16 21 C 0.03 0.53 4.91 -3.71 -0.02 0.51 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.90 8.04 -51.93 -0.42 0.48 16 24 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 25 H 0.10 1.94 6.80 -51.93 -0.35 1.59 16 26 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.15 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -31.24 280.65 -7.03 -38.28 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.50 Total: -1.37 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.01 Total: -9.27 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.38 Total: -38.54 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.35 Total: -9.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.24 -7.03 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120978824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.139 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds