Wall clock time and date at job start Sun Mar 29 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.47017 * 110.99979 * 66.04631 * 10 9 7 12 12 C 1.53097 * 109.26114 * 182.38895 * 11 10 9 13 13 O 1.43015 * 109.25729 * 303.15818 * 12 11 10 14 14 C 1.43011 * 113.74287 * 58.66733 * 13 12 11 15 15 H 1.09002 * 109.50785 * 61.30798 * 14 13 12 16 16 C 1.50700 * 109.50464 * 181.39313 * 14 13 12 17 17 C 1.34508 * 125.78762 * 219.99276 * 16 14 13 18 18 C 1.41383 * 106.84253 * 180.02562 * 17 16 14 19 19 C 1.34513 * 106.84019 * 0.02562 * 18 17 16 20 20 O 1.34304 * 125.78796 * 39.69808 * 16 14 13 21 21 C 1.47007 * 111.00177 * 189.68100 * 10 9 7 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09000 * 109.50700 * 302.32682 * 11 10 9 26 26 H 1.09007 * 109.50617 * 62.45609 * 11 10 9 27 27 H 1.09010 * 109.50310 * 63.08808 * 12 11 10 28 28 H 1.08997 * 109.50631 * 183.21415 * 12 11 10 29 29 H 1.08004 * 126.58375 * 359.97219 * 17 16 14 30 30 H 1.07997 * 126.58522 * 179.97438 * 18 17 16 31 31 H 1.08001 * 125.79449 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.50639 * 297.54367 * 21 10 9 33 33 H 1.08997 * 109.50784 * 57.67503 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9716 -3.6540 1.2538 12 6 3.9929 -4.7926 1.1873 13 8 3.3112 -6.0234 0.9313 14 6 2.5557 -6.0215 -0.2830 15 1 3.2254 -5.8623 -1.1281 16 6 1.8527 -7.3451 -0.4404 17 6 1.7104 -8.0283 -1.5903 18 6 0.9916 -9.2058 -1.2809 19 6 0.7372 -9.1715 0.0395 20 8 1.2669 -8.0453 0.5446 21 6 1.5198 -4.8953 -0.2313 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.4917 -2.7061 1.3918 26 1 2.2927 -3.8225 2.0898 27 1 4.7044 -4.5969 0.3849 28 1 4.5239 -4.8611 2.1367 29 1 2.0744 -7.7336 -2.5635 30 1 0.7016 -9.9833 -1.9721 31 1 0.2029 -9.9246 0.5997 32 1 0.8177 -5.0836 0.5809 33 1 0.9801 -4.8536 -1.1774 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120978824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:30 Heat of formation + Delta-G solvation = -43.030034 kcal Electronic energy + Delta-G solvation = -16775.649041 eV Core-core repulsion = 13995.466156 eV Total energy + Delta-G solvation = -2780.182885 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.52029 -40.51428 -36.96293 -34.60548 -34.14476 -33.16047 -30.31901 -29.57675 -26.92887 -25.08481 -23.95447 -22.70549 -21.62927 -21.16535 -18.66378 -18.53906 -17.39404 -17.08614 -16.83623 -16.41033 -16.03512 -15.94874 -15.51478 -14.85430 -14.51786 -14.08331 -13.71602 -13.59575 -13.40049 -13.09178 -12.78385 -12.71413 -12.55393 -12.45761 -12.08259 -11.61625 -11.42919 -10.89159 -10.70350 -10.62811 -9.45018 -9.24449 -8.23421 -6.34737 0.71998 1.42154 1.43891 1.54891 1.68198 2.06978 2.39226 2.66039 3.06549 3.12698 3.75873 3.84376 3.98161 4.11379 4.16004 4.21793 4.30178 4.43325 4.56422 4.67787 4.86813 4.89444 4.90463 5.01832 5.10461 5.12867 5.17958 5.58842 5.59944 5.93534 6.00231 6.13057 6.26093 6.43008 6.79943 7.35409 8.88358 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045149 B = 0.005398 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.021340 B = 5185.405294 C = 5522.919747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.207 3.793 10 N -0.535 5.535 11 C 0.024 3.976 12 C 0.071 3.929 13 O -0.393 6.393 14 C 0.184 3.816 15 H 0.110 0.890 16 C -0.032 4.032 17 C -0.197 4.197 18 C -0.221 4.221 19 C -0.043 4.043 20 O -0.192 6.192 21 C 0.031 3.969 22 H 0.265 0.735 23 H 0.007 0.993 24 H -0.041 1.041 25 H 0.088 0.912 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.239 0.761 32 H 0.015 0.985 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -15.827 -1.042 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.081 3.919 10 N -0.260 5.260 11 C -0.104 4.104 12 C -0.005 4.005 13 O -0.313 6.313 14 C 0.126 3.874 15 H 0.127 0.873 16 C -0.082 4.082 17 C -0.216 4.216 18 C -0.240 4.240 19 C -0.110 4.110 20 O -0.088 6.088 21 C -0.098 4.098 22 H 0.074 0.926 23 H 0.025 0.975 24 H -0.023 1.023 25 H 0.107 0.893 26 H 0.034 0.966 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.255 0.745 32 H 0.033 0.967 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.422 -15.698 -0.999 16.637 hybrid contribution -0.907 1.073 0.408 1.463 sum 4.515 -14.625 -0.590 15.317 Atomic orbital electron populations 1.70099 1.07953 1.28078 1.51547 1.25974 0.95735 1.03435 0.94554 0.85303 0.78542 0.77775 0.78523 1.19740 1.20952 1.18444 1.21425 0.93833 0.90565 1.50462 0.91226 1.19421 0.90083 0.88865 0.93515 1.62315 1.27047 1.02212 1.34429 1.22741 0.96854 1.00899 0.89946 1.22879 0.92967 0.81153 1.03501 1.87972 1.65608 1.36375 1.41300 1.20449 0.90961 0.86608 0.89358 0.87293 1.22133 1.02874 0.95645 0.87543 1.21916 1.04788 0.95984 0.98910 1.22192 1.04700 1.00492 0.96604 1.24962 1.01513 0.89044 0.95459 1.84067 1.56432 1.30212 1.38090 1.22710 0.95817 0.90199 1.01070 0.92602 0.97498 1.02329 0.89323 0.96637 0.90822 0.85667 0.81456 0.80377 0.74499 0.96655 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.73 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.52 -29.62 8.48 25.60 0.22 -29.41 16 8 H 0.07 3.77 7.12 -2.91 -0.02 3.75 16 9 C 0.21 11.34 4.72 85.56 0.40 11.74 16 10 N -0.54 -23.90 4.72 -899.77 -4.25 -28.14 16 11 C 0.02 0.95 5.46 86.31 0.47 1.42 16 12 C 0.07 2.18 7.01 72.01 0.50 2.69 16 13 O -0.39 -13.48 10.45 -146.90 -1.54 -15.02 16 14 C 0.18 6.08 3.27 29.88 0.10 6.18 16 15 H 0.11 3.23 8.13 -2.39 -0.02 3.21 16 16 C -0.03 -0.97 6.21 24.83 0.15 -0.82 16 17 C -0.20 -4.92 10.80 22.19 0.24 -4.68 16 18 C -0.22 -4.58 10.91 22.19 0.24 -4.34 16 19 C -0.04 -0.92 12.09 66.97 0.81 -0.11 16 20 O -0.19 -5.93 10.65 -0.51 -0.01 -5.93 16 21 C 0.03 1.22 4.91 86.32 0.42 1.64 16 22 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 23 H 0.01 0.41 8.04 -2.39 -0.02 0.39 16 24 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 25 H 0.09 3.60 6.80 -2.39 -0.02 3.59 16 26 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.24 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 Total: -1.00 -68.90 280.65 1.64 -67.26 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.09 Total: 7.66 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.03 Total: -15.17 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.96 Total: -84.59 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.54 Total: -20.95 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.90 1.64 -67.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120978824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.229 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds