Wall clock time and date at job start Sun Mar 29 2020 22:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 N 1.46495 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99640 * 264.76957 * 4 3 2 6 6 H 1.07995 * 120.00380 * 138.85643 * 5 4 3 7 7 C 1.38959 * 120.00161 * 318.85570 * 5 4 3 8 8 N 1.31415 * 119.99597 * 341.82826 * 7 5 4 9 9 Si 1.86799 * 120.00177 * 161.82882 * 7 5 4 10 10 H 1.48496 * 109.47257 * 89.99823 * 9 7 5 11 11 H 1.48498 * 109.46960 * 210.00049 * 9 7 5 12 12 H 1.48502 * 109.46857 * 329.99975 * 9 7 5 13 13 C 1.34768 * 120.00499 * 84.77004 * 4 3 2 14 14 O 1.21297 * 120.00450 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99930 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.47275 * 179.97438 * 15 13 4 17 17 C 1.41390 * 126.57637 * 89.99985 * 16 15 13 18 18 C 1.34516 * 106.83722 * 180.26251 * 17 16 15 19 19 O 1.34299 * 108.42010 * 359.63446 * 18 17 16 20 20 C 1.34296 * 109.47853 * 0.38069 * 19 18 17 21 21 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47051 * 300.00553 * 1 2 3 23 23 H 1.09004 * 109.46629 * 59.99646 * 1 2 3 24 24 H 1.09003 * 109.47187 * 240.00361 * 2 1 3 25 25 H 1.09000 * 109.47233 * 119.99962 * 2 1 3 26 26 H 1.09000 * 109.46810 * 59.99569 * 3 2 1 27 27 H 1.09000 * 109.46959 * 300.00130 * 3 2 1 28 28 H 0.96997 * 119.99510 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46448 * 60.00383 * 15 13 4 30 30 H 1.08998 * 109.47357 * 300.00437 * 15 13 4 31 31 H 1.08001 * 126.57757 * 0.02562 * 17 16 15 32 32 H 1.07998 * 125.78219 * 179.77374 * 18 17 16 33 33 H 1.08006 * 125.79145 * 179.78943 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5505 1.1815 6 1 5.0709 0.9483 1.3523 7 6 3.7539 2.4351 2.1601 8 7 2.9284 3.4078 1.8451 9 14 4.3398 2.2414 3.9232 10 1 5.5844 3.0270 4.1204 11 1 3.2905 2.7353 4.8506 12 1 4.6103 0.8077 4.2002 13 6 4.1785 1.3363 -1.1631 14 8 5.3914 1.3358 -1.1636 15 6 3.4245 1.2169 -2.4625 16 6 4.4034 1.1134 -3.6037 17 6 4.9515 -0.0752 -4.1383 18 6 5.7780 0.2906 -5.1346 19 8 5.7534 1.6295 -5.2363 20 6 4.9239 2.1340 -4.3084 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 2.6230 4.0250 2.5282 29 1 2.7975 2.0978 -2.6009 30 1 2.7981 0.3252 -2.4386 31 1 4.7487 -1.0831 -3.8075 32 1 6.3606 -0.3791 -5.7497 33 1 4.7106 3.1815 -4.1544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122306257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:23 Heat of formation + Delta-G solvation = -24.473222 kcal Electronic energy + Delta-G solvation = -16890.881410 eV Core-core repulsion = 14111.503208 eV Total energy + Delta-G solvation = -2779.378202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.11411 -38.49665 -35.24822 -33.47989 -32.66142 -31.14194 -29.88706 -27.49986 -25.69421 -24.20127 -21.22888 -20.99576 -20.42628 -18.75310 -16.87512 -16.79166 -16.00569 -15.36565 -14.82808 -14.45773 -14.25439 -13.99241 -13.72004 -12.95059 -12.65583 -12.42370 -12.19509 -11.87680 -11.53951 -11.40668 -11.37024 -10.97413 -10.94642 -10.57594 -10.32961 -10.22969 -9.90709 -9.30504 -8.87995 -8.37720 -8.03297 -7.35797 -6.28278 -3.96151 2.18274 3.03662 3.19805 3.27724 3.33047 3.52685 3.99587 4.20996 4.94150 5.06112 5.18642 5.32021 5.49998 5.58449 5.67535 5.79446 5.90449 6.06838 6.07261 6.15648 6.27912 6.38949 6.46081 6.49185 6.55400 6.64883 6.88502 6.96153 7.26369 7.51504 7.62067 8.35151 8.58311 9.25945 9.45443 10.09553 10.76951 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.007362 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.837406 B = 3802.509439 C = 4466.512350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.446 5.446 5 C -0.307 4.307 6 H 0.086 0.914 7 C 0.038 3.962 8 N -0.873 5.873 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.465 3.535 14 O -0.572 6.572 15 C -0.072 4.072 16 C -0.143 4.143 17 C -0.197 4.197 18 C -0.057 4.057 19 O -0.183 6.183 20 C -0.039 4.039 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.266 0.734 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.197 0.803 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -4.692 -8.297 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.015 4.015 4 N -0.165 5.165 5 C -0.435 4.435 6 H 0.104 0.896 7 C -0.166 4.166 8 N -0.511 5.511 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.455 6.455 15 C -0.112 4.112 16 C -0.144 4.144 17 C -0.216 4.216 18 C -0.124 4.124 19 O -0.079 6.079 20 C -0.106 4.106 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.121 0.879 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.213 0.787 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.367 -4.358 -8.379 10.027 hybrid contribution 0.005 -0.138 1.118 1.127 sum -3.362 -4.496 -7.260 9.178 Atomic orbital electron populations 1.21682 0.96372 1.00663 1.01569 1.22005 0.94857 0.99462 1.01705 1.21522 0.82388 0.94145 1.03433 1.43432 1.04326 1.64004 1.04761 1.19347 1.11866 1.21290 0.90998 0.89646 1.25404 0.97105 0.93592 1.00475 1.69926 1.33725 1.13556 1.33904 0.86112 0.78431 0.78850 0.82369 1.20323 1.20849 1.19441 1.20305 0.88136 0.81691 0.84557 1.90531 1.14121 1.54049 1.86776 1.20118 0.96436 1.03238 0.91424 1.19999 1.02579 0.92860 0.98999 1.21657 1.01483 0.99466 0.98981 1.23802 1.04038 0.81702 1.02839 1.83996 1.53841 1.21295 1.48741 1.23728 0.95429 0.99237 0.92247 0.93478 0.92754 0.93139 0.93155 0.91725 0.87857 0.93436 0.92368 0.89465 0.89558 0.84031 0.78669 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.52 6.17 -26.73 -0.16 -2.68 16 3 C 0.11 2.34 4.69 -4.04 -0.02 2.32 16 4 N -0.45 -11.33 2.50 -114.81 -0.29 -11.62 16 5 C -0.31 -8.61 8.84 -14.93 -0.13 -8.74 16 6 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 7 C 0.04 1.02 4.95 -17.46 -0.09 0.94 16 8 N -0.87 -23.70 11.61 55.50 0.64 -23.06 16 9 Si 0.92 20.84 29.59 -169.99 -5.03 15.81 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.47 11.59 7.59 -10.99 -0.08 11.50 16 14 O -0.57 -16.53 15.95 5.54 0.09 -16.44 16 15 C -0.07 -1.37 4.82 -29.03 -0.14 -1.51 16 16 C -0.14 -2.64 4.66 -104.74 -0.49 -3.13 16 17 C -0.20 -3.27 10.87 -39.70 -0.43 -3.70 16 18 C -0.06 -0.83 12.09 29.42 0.36 -0.47 16 19 O -0.18 -2.99 10.65 5.74 0.06 -2.93 16 20 C -0.04 -0.67 12.01 29.41 0.35 -0.32 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.85 6.60 -51.93 -0.34 0.51 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.45 5.76 -51.93 -0.30 2.15 16 27 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.09 1.52 7.41 -51.93 -0.38 1.14 16 30 H 0.09 1.47 6.54 -51.93 -0.34 1.13 16 31 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.20 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -32.67 284.04 -4.93 -37.59 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.22 Total: 3.87 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.47 Total: -7.50 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.36 Total: -34.68 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.15 Total: -19.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.67 -4.93 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122306257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.121 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds