Wall clock time and date at job start Sun Mar 29 2020 22:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 N 1.46495 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99640 * 264.76957 * 4 3 2 6 6 H 1.07995 * 120.00380 * 138.85643 * 5 4 3 7 7 C 1.38959 * 120.00161 * 318.85570 * 5 4 3 8 8 N 1.31415 * 119.99597 * 341.82826 * 7 5 4 9 9 Si 1.86799 * 120.00177 * 161.82882 * 7 5 4 10 10 H 1.48496 * 109.47257 * 89.99823 * 9 7 5 11 11 H 1.48498 * 109.46960 * 210.00049 * 9 7 5 12 12 H 1.48502 * 109.46857 * 329.99975 * 9 7 5 13 13 C 1.34768 * 120.00499 * 84.77004 * 4 3 2 14 14 O 1.21297 * 120.00450 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99930 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.47275 * 179.97438 * 15 13 4 17 17 C 1.41390 * 126.57637 * 89.99985 * 16 15 13 18 18 C 1.34516 * 106.83722 * 180.26251 * 17 16 15 19 19 O 1.34299 * 108.42010 * 359.63446 * 18 17 16 20 20 C 1.34296 * 109.47853 * 0.38069 * 19 18 17 21 21 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47051 * 300.00553 * 1 2 3 23 23 H 1.09004 * 109.46629 * 59.99646 * 1 2 3 24 24 H 1.09003 * 109.47187 * 240.00361 * 2 1 3 25 25 H 1.09000 * 109.47233 * 119.99962 * 2 1 3 26 26 H 1.09000 * 109.46810 * 59.99569 * 3 2 1 27 27 H 1.09000 * 109.46959 * 300.00130 * 3 2 1 28 28 H 0.96997 * 119.99510 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46448 * 60.00383 * 15 13 4 30 30 H 1.08998 * 109.47357 * 300.00437 * 15 13 4 31 31 H 1.08001 * 126.57757 * 0.02562 * 17 16 15 32 32 H 1.07998 * 125.78219 * 179.77374 * 18 17 16 33 33 H 1.08006 * 125.79145 * 179.78943 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5505 1.1815 6 1 5.0709 0.9483 1.3523 7 6 3.7539 2.4351 2.1601 8 7 2.9284 3.4078 1.8451 9 14 4.3398 2.2414 3.9232 10 1 5.5844 3.0270 4.1204 11 1 3.2905 2.7353 4.8506 12 1 4.6103 0.8077 4.2002 13 6 4.1785 1.3363 -1.1631 14 8 5.3914 1.3358 -1.1636 15 6 3.4245 1.2169 -2.4625 16 6 4.4034 1.1134 -3.6037 17 6 4.9515 -0.0752 -4.1383 18 6 5.7780 0.2906 -5.1346 19 8 5.7534 1.6295 -5.2363 20 6 4.9239 2.1340 -4.3084 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 2.6230 4.0250 2.5282 29 1 2.7975 2.0978 -2.6009 30 1 2.7981 0.3252 -2.4386 31 1 4.7487 -1.0831 -3.8075 32 1 6.3606 -0.3791 -5.7497 33 1 4.7106 3.1815 -4.1544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122306257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:22 Heat of formation + Delta-G solvation = -44.916684 kcal Electronic energy + Delta-G solvation = -16891.767905 eV Core-core repulsion = 14111.503208 eV Total energy + Delta-G solvation = -2780.264697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.36955 -40.38294 -37.10266 -34.98188 -34.34584 -32.95807 -31.22890 -29.03032 -27.34437 -26.03313 -22.58159 -22.35614 -21.93226 -20.39954 -18.76844 -18.20847 -17.77941 -16.91232 -16.57404 -16.03145 -15.88470 -15.42240 -15.33691 -14.45953 -14.31379 -13.79158 -13.62612 -13.41158 -13.22141 -13.14592 -12.96527 -12.62600 -12.45235 -12.17889 -12.07352 -11.96159 -11.47220 -10.86991 -10.71322 -10.22648 -9.37813 -9.33800 -8.32835 -6.09098 0.94144 1.36871 1.39715 1.51925 1.72029 2.09933 2.31300 2.35407 3.01625 3.20913 3.95970 3.99877 4.10968 4.21194 4.28999 4.37905 4.56309 4.63985 4.69355 4.79250 4.87777 5.00940 5.15688 5.20378 5.31781 5.34984 5.42398 5.47809 5.59961 5.64715 6.25039 6.26161 6.59222 7.21841 7.49814 8.12403 8.70648 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.007362 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.837406 B = 3802.509439 C = 4466.512350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.110 3.890 4 N -0.457 5.457 5 C -0.342 4.342 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.891 5.891 9 Si 0.978 3.022 10 H -0.280 1.280 11 H -0.265 1.265 12 H -0.267 1.267 13 C 0.452 3.548 14 O -0.624 6.624 15 C -0.056 4.056 16 C -0.173 4.173 17 C -0.225 4.225 18 C -0.041 4.041 19 O -0.187 6.187 20 C -0.049 4.049 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.273 0.727 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.153 0.847 32 H 0.242 0.758 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -5.242 -8.979 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.176 5.176 5 C -0.470 4.470 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.528 5.528 9 Si 0.801 3.199 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.192 1.192 13 C 0.241 3.759 14 O -0.511 6.511 15 C -0.096 4.096 16 C -0.175 4.175 17 C -0.244 4.244 18 C -0.107 4.107 19 O -0.083 6.083 20 C -0.116 4.116 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.171 0.829 32 H 0.258 0.742 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.443 -4.907 -9.067 11.226 hybrid contribution 0.359 0.043 1.296 1.345 sum -4.084 -4.864 -7.771 10.036 Atomic orbital electron populations 1.21634 0.93240 1.02411 1.02234 1.21899 0.97443 0.96616 1.01213 1.21631 0.80086 0.96552 1.03035 1.43729 1.05921 1.63550 1.04400 1.19301 1.12305 1.22306 0.93133 0.92518 1.26114 0.96987 0.92823 1.03790 1.69985 1.33939 1.13655 1.35219 0.85193 0.78132 0.78784 0.77780 1.20587 1.18977 1.19193 1.21260 0.87966 0.80421 0.86204 1.90479 1.16509 1.56288 1.87782 1.19975 0.96304 1.04934 0.88337 1.20192 1.03596 0.94304 0.99400 1.21944 1.02666 0.99646 1.00113 1.24657 1.02730 0.81279 1.02065 1.84014 1.53524 1.22298 1.48508 1.24085 0.95293 0.99974 0.92258 0.91196 0.93193 0.91404 0.92115 0.93781 0.90304 0.91584 0.91770 0.87802 0.87407 0.82948 0.74187 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.13 -4.59 6.17 30.60 0.19 -4.40 16 3 C 0.11 4.69 4.69 86.38 0.41 5.09 16 4 N -0.46 -23.71 2.50 -635.54 -1.59 -25.31 16 5 C -0.34 -19.83 8.84 84.04 0.74 -19.08 16 6 H 0.06 3.53 7.82 -2.91 -0.02 3.51 16 7 C 0.01 0.29 4.95 84.93 0.42 0.72 16 8 N -0.89 -48.54 11.61 21.67 0.25 -48.29 16 9 Si 0.98 43.05 29.59 68.60 2.03 45.08 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.45 22.89 7.59 87.66 0.66 23.55 16 14 O -0.62 -37.30 15.95 -3.08 -0.05 -37.35 16 15 C -0.06 -2.08 4.82 29.10 0.14 -1.94 16 16 C -0.17 -6.27 4.66 -19.94 -0.09 -6.36 16 17 C -0.22 -7.17 10.87 22.19 0.24 -6.93 16 18 C -0.04 -1.10 12.09 66.97 0.81 -0.29 16 19 O -0.19 -5.84 10.65 -2.38 -0.03 -5.87 16 20 C -0.05 -1.63 12.01 66.97 0.80 -0.83 16 21 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.06 1.95 6.60 -2.39 -0.02 1.93 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 3.76 5.76 -2.39 -0.01 3.75 16 27 H 0.07 2.51 6.66 -2.39 -0.02 2.49 16 28 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.10 3.48 7.41 -2.39 -0.02 3.46 16 30 H 0.11 3.50 6.54 -2.39 -0.02 3.48 16 31 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.24 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.21 6.06 8.06 -2.91 -0.02 6.03 16 Total: -1.00 -72.59 284.04 6.76 -65.83 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.10 Total: 19.23 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.04 Total: -13.33 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.34 Total: -73.59 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.07 Total: -43.22 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.59 6.76 -65.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122306257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.917 kcal (2) G-P(sol) polarization free energy of solvation -72.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds