Wall clock time and date at job start Sun Mar 29 2020 21:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58295 * 2 1 4 4 C 1.53533 * 109.58441 * 120.28247 * 2 1 3 5 5 N 1.47288 * 107.60080 * 178.11709 * 4 2 1 6 6 C 1.36805 * 121.12339 * 137.96323 * 5 4 2 7 7 H 1.08001 * 119.99537 * 205.16571 * 6 5 4 8 8 C 1.38745 * 120.00737 * 25.16518 * 6 5 4 9 9 N 1.31634 * 119.99653 * 25.88194 * 8 6 5 10 10 Si 1.86800 * 120.00345 * 206.16331 * 8 6 5 11 11 H 1.48493 * 109.47050 * 179.72245 * 10 8 6 12 12 H 1.48502 * 109.46804 * 299.72070 * 10 8 6 13 13 H 1.48497 * 109.47209 * 59.71946 * 10 8 6 14 14 C 1.39883 * 117.74742 * 318.23167 * 5 4 2 15 15 C 1.38943 * 119.98058 * 193.99264 * 14 5 4 16 16 C 1.38151 * 119.85673 * 179.88170 * 15 14 5 17 17 C 1.38558 * 120.06857 * 359.71729 * 16 15 14 18 18 F 1.35109 * 119.85898 * 179.97438 * 17 16 15 19 19 C 1.38426 * 120.28891 * 359.96099 * 17 16 15 20 20 C 1.38657 * 120.03999 * 359.97438 * 19 17 16 21 21 O 1.35875 * 119.64943 * 180.16295 * 20 19 17 22 22 H 1.09002 * 109.47400 * 299.72034 * 1 2 3 23 23 H 1.08999 * 109.47084 * 59.71739 * 1 2 3 24 24 H 1.09001 * 109.46906 * 179.71436 * 1 2 3 25 25 H 1.08991 * 109.83553 * 58.59014 * 4 2 1 26 26 H 1.09003 * 109.83587 * 297.63562 * 4 2 1 27 27 H 0.96996 * 120.00009 * 6.12274 * 9 8 6 28 28 H 1.07995 * 120.08385 * 359.59743 * 15 14 5 29 29 H 1.08008 * 119.96533 * 179.74106 * 16 15 14 30 30 H 1.07990 * 119.98018 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0447 -0.7294 1.2491 5 7 3.5159 -0.7437 1.1821 6 6 4.2768 -0.5002 2.2926 7 1 5.2805 -0.1161 2.1859 8 6 3.7591 -0.7466 3.5561 9 7 2.8098 -1.6446 3.7146 10 14 4.4037 0.2014 5.0309 11 1 3.6877 -0.2400 6.2546 12 1 5.8577 -0.0564 5.1880 13 1 4.1783 1.6543 4.8224 14 6 4.1089 -1.0089 -0.0568 15 6 5.4609 -1.3214 -0.1268 16 6 6.0433 -1.5853 -1.3514 17 6 5.2795 -1.5442 -2.5067 18 9 5.8535 -1.8025 -3.7022 19 6 3.9306 -1.2399 -2.4414 20 6 3.3373 -0.9750 -1.2165 21 8 2.0121 -0.6804 -1.1613 22 1 -0.3634 0.5095 0.8925 23 1 -0.3633 0.5182 -0.8874 24 1 -0.3633 -1.0277 -0.0051 25 1 1.6652 -1.7511 1.2634 26 1 1.7205 -0.2011 2.1458 27 1 2.5342 -2.1964 2.9660 28 1 6.0564 -1.3535 0.7736 29 1 7.0951 -1.8243 -1.4083 30 1 3.3399 -1.2096 -3.3449 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127918121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:15 Heat of formation + Delta-G solvation = -49.886569 kcal Electronic energy + Delta-G solvation = -16900.965010 eV Core-core repulsion = 13997.024498 eV Total energy + Delta-G solvation = -2903.940512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.96857 -40.03675 -36.64842 -35.94156 -32.26578 -31.70471 -29.56018 -27.60485 -26.51081 -23.50417 -22.58562 -21.84755 -19.59955 -18.13720 -17.76381 -16.29018 -16.05249 -15.24618 -14.82669 -14.56276 -14.03975 -13.98730 -13.78299 -13.27945 -13.21892 -12.63522 -12.33242 -12.09593 -11.99822 -11.39925 -11.21904 -11.07750 -10.83242 -10.45891 -10.35844 -10.13525 -9.73757 -9.37663 -8.69532 -7.83618 -6.97288 -6.63537 -3.92157 2.08710 2.14812 3.18408 3.21512 3.39434 3.71845 4.01155 4.35634 4.52964 4.82629 5.17210 5.29043 5.40242 5.44896 5.54555 5.71572 5.78337 5.92824 6.05614 6.17862 6.23436 6.34287 6.44075 6.66290 6.81836 7.06966 7.10842 7.43618 7.62254 7.83834 8.05840 8.37961 9.00834 9.30070 10.38506 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.009384 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.354698 B = 2983.094723 C = 3939.910798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.067 0.933 4 C 0.091 3.909 5 N -0.458 5.458 6 C -0.389 4.389 7 H 0.089 0.911 8 C 0.003 3.997 9 N -0.870 5.870 10 Si 1.075 2.925 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.140 3.860 15 C -0.159 4.159 16 C -0.121 4.121 17 C 0.001 3.999 18 F -0.160 7.160 19 C -0.128 4.128 20 C 0.036 3.964 21 O -0.317 6.317 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.278 0.722 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 2.775 -4.309 5.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.034 4.034 5 N -0.148 5.148 6 C -0.516 4.516 7 H 0.107 0.893 8 C -0.205 4.205 9 N -0.502 5.502 10 Si 0.900 3.100 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.026 3.974 15 C -0.184 4.184 16 C -0.141 4.141 17 C -0.022 4.022 18 F -0.139 7.139 19 C -0.149 4.149 20 C -0.014 4.014 21 O -0.233 6.233 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.875 3.004 -2.506 4.338 hybrid contribution 0.442 -0.298 -1.635 1.720 sum -1.432 2.706 -4.142 5.150 Atomic orbital electron populations 1.21702 0.92244 1.03133 1.02529 1.22739 0.95086 0.95426 0.85602 0.91520 1.22405 0.82606 1.00284 0.98084 1.42737 1.02997 1.63989 1.05071 1.20328 1.01630 1.44978 0.84698 0.89334 1.26467 0.97118 0.96808 1.00136 1.70842 1.28781 1.15561 1.35055 0.83398 0.76168 0.75632 0.74788 1.20240 1.20724 1.20921 1.18149 0.93552 0.99669 0.86005 1.20214 0.93672 1.07427 0.97062 1.20639 0.99148 1.03057 0.91221 1.16716 0.91112 1.13901 0.80424 1.91357 1.84918 1.93073 1.44532 1.19834 0.92948 1.06281 0.95810 1.17811 0.83378 1.08267 0.91905 1.85877 1.21065 1.74218 1.42094 0.90527 0.91708 0.91622 0.92095 0.88489 0.91092 0.85248 0.86320 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.59 37.16 0.36 -1.63 16 2 C 0.07 1.30 3.58 -26.45 -0.09 1.20 16 3 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 4 C 0.09 1.97 4.18 -3.34 -0.01 1.96 16 5 N -0.46 -11.12 2.90 -112.06 -0.32 -11.44 16 6 C -0.39 -9.86 8.68 -15.15 -0.13 -9.99 16 7 H 0.09 2.23 7.02 -52.49 -0.37 1.86 16 8 C 0.00 0.06 4.72 -17.45 -0.08 -0.02 16 9 N -0.87 -22.96 12.58 55.49 0.70 -22.26 16 10 Si 1.07 21.95 29.99 -169.99 -5.10 16.85 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 C 0.14 3.27 6.34 -83.52 -0.53 2.74 16 15 C -0.16 -3.48 9.26 -39.35 -0.36 -3.84 16 16 C -0.12 -2.38 10.02 -39.50 -0.40 -2.77 16 17 C 0.00 0.03 7.29 -39.39 -0.29 -0.26 16 18 F -0.16 -3.06 17.26 2.25 0.04 -3.02 16 19 C -0.13 -2.60 9.95 -39.36 -0.39 -2.99 16 20 C 0.04 0.79 6.52 -39.02 -0.25 0.53 16 21 O -0.32 -6.58 9.98 -19.35 -0.19 -6.77 16 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.36 7.38 -51.93 -0.38 0.98 16 26 H 0.10 2.16 6.90 -51.93 -0.36 1.80 16 27 H 0.28 7.44 6.42 -40.82 -0.26 7.18 16 28 H 0.13 2.83 6.72 -52.49 -0.35 2.47 16 29 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -27.19 257.27 -6.25 -33.44 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.06 Total: 4.41 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.19 Total: -15.08 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.37 Total: -33.70 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.19 Total: -6.77 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.10 Total: 16.85 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.19 -6.25 -33.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127918121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.446 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds