Wall clock time and date at job start Sun Mar 29 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 N 1.46496 * 109.47824 * 182.36124 * 3 2 1 5 5 C 1.36967 * 119.99857 * 86.70317 * 4 3 2 6 6 H 1.07996 * 119.99834 * 170.46268 * 5 4 3 7 7 C 1.38981 * 119.99696 * 350.45820 * 5 4 3 8 8 N 1.31404 * 120.00386 * 4.09299 * 7 5 4 9 9 Si 1.86801 * 119.99551 * 184.09241 * 7 5 4 10 10 H 1.48504 * 109.47387 * 60.00348 * 9 7 5 11 11 H 1.48504 * 109.47122 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47481 * 300.00211 * 9 7 5 13 13 C 1.34773 * 119.99994 * 266.70919 * 4 3 2 14 14 O 1.21643 * 119.99754 * 188.10551 * 13 4 3 15 15 C 1.47295 * 120.00328 * 8.10262 * 13 4 3 16 16 C 1.36496 * 127.20061 * 187.97353 * 15 13 4 17 17 O 1.33671 * 108.38175 * 180.02562 * 16 15 13 18 18 C 1.34225 * 110.90815 * 359.97438 * 17 16 15 19 19 C 1.50697 * 125.42818 * 180.02562 * 18 17 16 20 20 C 1.34174 * 109.14374 * 0.02562 * 18 17 16 21 21 H 1.09002 * 109.47051 * 299.99589 * 1 2 3 22 22 H 1.08992 * 109.47370 * 60.00269 * 1 2 3 23 23 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47420 * 239.99763 * 2 1 3 25 25 H 1.09004 * 109.47599 * 120.00121 * 2 1 3 26 26 H 1.09005 * 109.47118 * 62.35569 * 3 2 1 27 27 H 1.09009 * 109.47125 * 302.36652 * 3 2 1 28 28 H 0.96996 * 120.00126 * 179.97438 * 8 7 5 29 29 H 1.08004 * 125.81096 * 359.97438 * 16 15 13 30 30 H 1.08999 * 109.47536 * 269.97923 * 19 18 17 31 31 H 1.09007 * 109.47124 * 29.97775 * 19 18 17 32 32 H 1.08991 * 109.47340 * 149.97335 * 19 18 17 33 33 H 1.07997 * 127.01363 * 179.73809 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5039 1.4429 -0.0569 5 6 4.1421 1.3912 -1.2677 6 1 5.2095 1.5461 -1.3224 7 6 3.4161 1.1393 -2.4257 8 7 2.1078 1.0307 -2.3704 9 14 4.3004 0.9552 -4.0608 10 1 5.2554 -0.1793 -3.9822 11 1 3.3077 0.6925 -5.1336 12 1 5.0411 2.2054 -4.3666 13 6 4.2225 1.4942 1.0821 14 8 5.4288 1.6432 1.0339 15 6 3.5473 1.3697 2.3852 16 6 4.0986 1.5494 3.6209 17 8 3.1501 1.3431 4.5398 18 6 1.9806 1.0315 3.9594 19 6 0.6952 0.7352 4.6881 20 6 2.1384 1.0258 2.6270 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7116 1.9440 0.9104 27 1 1.6424 1.9684 -0.8681 28 1 1.6011 0.8552 -3.1786 29 1 5.1266 1.8126 3.8220 30 1 0.6339 -0.3328 4.8973 31 1 0.6727 1.2908 5.6257 32 1 -0.1506 1.0333 4.0688 33 1 1.3853 0.8085 1.8840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130324699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:12 Heat of formation + Delta-G solvation = -11.630356 kcal Electronic energy + Delta-G solvation = -17418.577392 eV Core-core repulsion = 14639.756098 eV Total energy + Delta-G solvation = -2778.821293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.41181 -40.34377 -37.43107 -34.81544 -33.32118 -33.28811 -32.56362 -27.85725 -27.46256 -26.46286 -23.94546 -22.40751 -22.14178 -19.74148 -19.05358 -18.22535 -17.66129 -17.12675 -16.48345 -15.89458 -15.59199 -15.52828 -14.78023 -14.23510 -14.02694 -13.79883 -13.67114 -13.48779 -13.32204 -13.02907 -12.81797 -12.62124 -12.24592 -12.18773 -12.03458 -11.79423 -11.60753 -10.81196 -10.59804 -10.42845 -9.74793 -9.36474 -8.13437 -5.89554 0.54881 1.16936 1.41086 1.45845 1.51155 2.01433 2.26383 2.49410 3.07917 3.19605 3.73610 4.05254 4.18291 4.37292 4.48701 4.58552 4.61184 4.73283 4.81128 4.86627 4.94931 4.98935 5.13605 5.24093 5.31069 5.37834 5.51942 5.55833 5.71447 5.91298 6.07516 6.20686 6.58012 7.14022 7.46766 8.01877 8.64291 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.008692 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.010109 B = 3220.620832 C = 4023.002987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C 0.104 3.896 4 N -0.439 5.439 5 C -0.343 4.343 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.867 5.867 9 Si 0.993 3.007 10 H -0.279 1.279 11 H -0.263 1.263 12 H -0.275 1.275 13 C 0.482 3.518 14 O -0.650 6.650 15 C -0.237 4.237 16 C 0.017 3.983 17 O -0.178 6.178 18 C -0.016 4.016 19 C -0.068 4.068 20 C -0.228 4.228 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.273 0.727 29 H 0.226 0.774 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -1.706 8.727 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C -0.018 4.018 4 N -0.153 5.153 5 C -0.471 4.471 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.506 5.506 9 Si 0.817 3.183 10 H -0.205 1.205 11 H -0.187 1.187 12 H -0.200 1.200 13 C 0.274 3.726 14 O -0.542 6.542 15 C -0.241 4.241 16 C -0.054 4.054 17 O -0.074 6.074 18 C -0.065 4.065 19 C -0.124 4.124 20 C -0.247 4.247 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.242 0.758 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.691 -1.649 8.803 12.480 hybrid contribution 1.021 -0.015 -1.278 1.636 sum -7.669 -1.664 7.525 10.872 Atomic orbital electron populations 1.21543 0.93710 1.01588 1.01789 1.21748 0.96962 0.96593 0.99678 1.22535 0.78478 0.98641 1.02164 1.43867 1.07200 1.59989 1.04292 1.19724 0.94002 1.48761 0.84576 0.90967 1.25974 0.96635 0.95450 1.01978 1.70117 1.05120 1.45840 1.29506 0.85007 0.77914 0.78543 0.76846 1.20497 1.18686 1.20031 1.17681 0.86135 0.84644 0.84185 1.90519 1.16201 1.59395 1.88085 1.21671 0.96313 1.12092 0.94028 1.24378 0.94299 1.01455 0.85233 1.83702 1.18033 1.68471 1.37183 1.23168 0.87969 1.03365 0.91995 1.20526 0.87160 1.03981 1.00720 1.23843 0.95814 1.08074 0.96930 0.91801 0.92842 0.92238 0.92761 0.94743 0.92186 0.87022 0.91582 0.75815 0.88510 0.88925 0.87615 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.73 71.98 0.70 -3.30 16 2 C -0.11 -4.60 4.52 30.59 0.14 -4.46 16 3 C 0.10 4.80 4.10 86.38 0.35 5.15 16 4 N -0.44 -24.26 2.62 -639.38 -1.68 -25.94 16 5 C -0.34 -20.11 9.53 84.07 0.80 -19.31 16 6 H 0.07 4.56 7.19 -2.91 -0.02 4.54 16 7 C 0.00 0.08 5.29 84.94 0.45 0.53 16 8 N -0.87 -42.77 7.55 21.67 0.16 -42.61 16 9 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.48 26.75 7.59 86.63 0.66 27.41 16 14 O -0.65 -40.42 16.54 -4.17 -0.07 -40.49 16 15 C -0.24 -10.53 6.03 -19.00 -0.11 -10.64 16 16 C 0.02 0.62 11.92 67.41 0.80 1.42 16 17 O -0.18 -5.69 10.52 4.20 0.04 -5.65 16 18 C -0.02 -0.48 7.28 24.76 0.18 -0.30 16 19 C -0.07 -1.16 10.40 71.23 0.74 -0.42 16 20 C -0.23 -8.25 7.58 23.65 0.18 -8.07 16 21 H 0.06 1.64 7.33 -2.39 -0.02 1.62 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 2.60 6.43 -2.38 -0.02 2.59 16 25 H 0.03 1.41 6.27 -2.39 -0.01 1.40 16 26 H 0.06 2.55 4.71 -2.38 -0.01 2.54 16 27 H 0.11 5.57 5.56 -2.38 -0.01 5.55 16 28 H 0.27 12.57 8.31 -92.71 -0.77 11.80 16 29 H 0.23 7.35 8.06 -2.91 -0.02 7.33 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.19 6.37 2.62 -2.91 -0.01 6.37 16 Total: -1.00 -69.75 269.30 6.51 -63.24 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.13 Total: 19.00 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.89 Total: -11.98 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.51 Total: -68.54 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.02 Total: -46.14 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.75 6.51 -63.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130324699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.606 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds