Wall clock time and date at job start Sun Mar 29 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21613 * 119.99796 * 359.97438 * 14 13 3 16 16 C 1.47377 * 120.00289 * 180.02562 * 14 13 3 17 17 C 1.36414 * 127.19114 * 359.67459 * 16 14 13 18 18 O 1.33654 * 108.39710 * 179.89803 * 17 16 14 19 19 C 1.34219 * 110.90689 * 0.38923 * 18 17 16 20 20 C 1.50705 * 125.43627 * 179.76130 * 19 18 17 21 21 C 1.34177 * 109.12549 * 359.76480 * 19 18 17 22 22 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 23 23 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 24 24 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 26 26 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 29 29 H 1.07994 * 125.80560 * 0.02562 * 17 16 14 30 30 H 1.09000 * 109.46967 * 269.99889 * 20 19 18 31 31 H 1.09000 * 109.47113 * 30.00003 * 20 19 18 32 32 H 1.09002 * 109.47058 * 150.00069 * 20 19 18 33 33 H 1.08000 * 127.02130 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3415 2.6319 -0.4319 16 6 0.0453 3.3228 -2.6265 17 6 0.7966 3.4489 -3.7581 18 8 0.0767 4.1083 -4.6710 19 6 -1.1304 4.4355 -4.1841 20 6 -2.2005 5.1870 -4.9333 21 6 -1.2324 3.9868 -2.9236 22 1 -0.3634 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.8288 -0.0530 2.9544 28 1 2.2721 2.1230 -1.9977 29 1 1.8014 3.0773 -3.8940 30 1 -2.0774 6.2571 -4.7666 31 1 -2.1163 4.9732 -5.9988 32 1 -3.1818 4.8742 -4.5764 33 1 -2.0801 4.0915 -2.2627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130326458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:23 Heat of formation + Delta-G solvation = -35.719141 kcal Electronic energy + Delta-G solvation = -16649.698394 eV Core-core repulsion = 13869.832533 eV Total energy + Delta-G solvation = -2779.865861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.38290 -38.72446 -35.01515 -32.95275 -32.59874 -31.82123 -30.59365 -27.22662 -26.36338 -23.70736 -22.55535 -20.88025 -19.85460 -19.07151 -17.65240 -16.44320 -16.18472 -15.42783 -15.19414 -14.44976 -14.33927 -13.84842 -13.24808 -13.13009 -12.91152 -12.70846 -12.57286 -12.03157 -11.76000 -11.50595 -11.24191 -10.96069 -10.84421 -10.31746 -10.16802 -9.64621 -9.48167 -9.12343 -9.03111 -8.49649 -8.46373 -7.80828 -6.12193 -4.21747 1.62354 2.23959 2.92888 3.24671 3.31425 3.32931 4.05747 4.08155 4.37799 4.68798 4.95249 5.09987 5.19319 5.30576 5.36640 5.57164 5.84497 5.89444 6.12685 6.41628 6.48228 6.49528 6.68829 7.06931 7.12389 7.22600 7.38321 7.45824 7.62805 7.74959 7.91039 8.18410 8.67292 8.78645 9.14829 9.45715 10.93239 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.005824 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.134217 B = 4806.606797 C = 5293.255157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.569 3.431 15 O -0.544 6.544 16 C -0.217 4.217 17 C 0.005 3.995 18 O -0.178 6.178 19 C -0.027 4.027 20 C -0.070 4.070 21 C -0.163 4.163 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.023 0.977 25 H 0.031 0.969 26 H 0.099 0.901 27 H 0.264 0.736 28 H 0.385 0.615 29 H 0.211 0.789 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 5.860 -12.707 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.355 3.645 15 O -0.424 6.424 16 C -0.221 4.221 17 C -0.064 4.064 18 O -0.075 6.075 19 C -0.076 4.076 20 C -0.126 4.126 21 C -0.183 4.183 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.217 0.783 29 H 0.228 0.772 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.540 5.791 -12.100 14.923 hybrid contribution 1.367 -0.150 0.002 1.376 sum -5.172 5.641 -12.098 14.315 Atomic orbital electron populations 1.21848 0.98338 0.98051 1.01318 1.21934 0.92646 0.99728 1.02279 1.18812 0.94241 0.89210 0.80842 0.93179 1.21222 0.90645 1.39228 1.06218 0.92101 1.24885 0.98612 0.94779 0.95369 1.69900 1.35142 1.37622 1.09226 0.86450 0.84821 0.77650 0.78179 1.20575 1.21068 1.19864 1.46384 1.14199 1.55949 1.18574 1.17248 0.82776 0.78779 0.85717 1.90746 1.51592 1.60192 1.39843 1.21931 0.96260 1.07444 0.96503 1.24418 0.97411 0.97350 0.87250 1.83678 1.24280 1.58556 1.40992 1.22238 0.86386 1.04372 0.94575 1.20272 0.93648 0.98919 0.99773 1.22517 0.98465 1.01779 0.95531 0.93125 0.94243 0.95836 0.95014 0.88254 0.92546 0.78276 0.77235 0.90229 0.90674 0.89390 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.87 2.24 -69.09 -0.15 6.71 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.69 11.30 55.43 0.63 -24.07 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.86 5.01 -56.03 -0.28 -15.14 16 14 C 0.57 12.02 6.38 -12.54 -0.08 11.94 16 15 O -0.54 -13.40 14.12 5.27 0.07 -13.32 16 16 C -0.22 -3.71 6.31 -103.28 -0.65 -4.36 16 17 C 0.01 0.07 11.61 30.07 0.35 0.42 16 18 O -0.18 -2.39 10.52 7.64 0.08 -2.31 16 19 C -0.03 -0.34 7.28 -35.74 -0.26 -0.60 16 20 C -0.07 -0.56 10.40 36.01 0.37 -0.18 16 21 C -0.16 -2.48 10.90 -37.45 -0.41 -2.89 16 22 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 23 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.68 5.96 -51.93 -0.31 2.38 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.39 6.90 7.51 -40.82 -0.31 6.60 16 29 H 0.21 2.15 7.47 -52.49 -0.39 1.76 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -31.47 281.75 -5.51 -36.98 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.18 Total: 5.90 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.06 Total: -7.78 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.21 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.15 Total: -15.63 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.47 -5.51 -36.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130326458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds