Wall clock time and date at job start Sun Mar 29 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21613 * 119.99796 * 359.97438 * 14 13 3 16 16 C 1.47377 * 120.00289 * 180.02562 * 14 13 3 17 17 C 1.36414 * 127.19114 * 359.67459 * 16 14 13 18 18 O 1.33654 * 108.39710 * 179.89803 * 17 16 14 19 19 C 1.34219 * 110.90689 * 0.38923 * 18 17 16 20 20 C 1.50705 * 125.43627 * 179.76130 * 19 18 17 21 21 C 1.34177 * 109.12549 * 359.76480 * 19 18 17 22 22 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 23 23 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 24 24 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 26 26 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 29 29 H 1.07994 * 125.80560 * 0.02562 * 17 16 14 30 30 H 1.09000 * 109.46967 * 269.99889 * 20 19 18 31 31 H 1.09000 * 109.47113 * 30.00003 * 20 19 18 32 32 H 1.09002 * 109.47058 * 150.00069 * 20 19 18 33 33 H 1.08000 * 127.02130 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3415 2.6319 -0.4319 16 6 0.0453 3.3228 -2.6265 17 6 0.7966 3.4489 -3.7581 18 8 0.0767 4.1083 -4.6710 19 6 -1.1304 4.4355 -4.1841 20 6 -2.2005 5.1870 -4.9333 21 6 -1.2324 3.9868 -2.9236 22 1 -0.3634 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.8288 -0.0530 2.9544 28 1 2.2721 2.1230 -1.9977 29 1 1.8014 3.0773 -3.8940 30 1 -2.0774 6.2571 -4.7666 31 1 -2.1163 4.9732 -5.9988 32 1 -3.1818 4.8742 -4.5764 33 1 -2.0801 4.0915 -2.2627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130326458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:23 Heat of formation + Delta-G solvation = -56.886969 kcal Electronic energy + Delta-G solvation = -16650.616300 eV Core-core repulsion = 13869.832533 eV Total energy + Delta-G solvation = -2780.783767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49424 -40.46046 -36.92621 -34.43994 -34.01013 -33.29379 -32.19903 -29.05622 -27.43301 -25.42697 -24.26786 -22.06536 -21.67631 -20.72524 -18.98810 -18.08528 -17.29645 -17.17222 -16.87758 -16.14427 -16.03909 -15.26285 -14.62737 -14.42494 -14.00041 -13.85687 -13.76630 -13.69590 -13.48861 -13.18266 -12.90922 -12.69508 -12.63378 -12.17273 -12.06264 -11.60675 -11.07064 -10.86875 -10.75738 -10.53209 -9.70740 -9.47725 -8.15796 -6.33534 0.43175 1.08682 1.46246 1.46568 1.57267 1.91788 2.35255 2.49973 2.62263 3.14060 3.70819 3.74374 4.13629 4.45219 4.47664 4.55194 4.59221 4.75732 4.76685 4.80399 4.92906 5.04550 5.14094 5.25107 5.42246 5.43741 5.54068 5.60505 5.78114 5.91457 6.04720 6.15321 6.73660 6.96836 7.32990 7.54496 8.89958 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.005824 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.134217 B = 4806.606797 C = 5293.255157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.258 1.258 13 N -0.698 5.698 14 C 0.568 3.432 15 O -0.590 6.590 16 C -0.260 4.260 17 C 0.037 3.963 18 O -0.173 6.173 19 C -0.008 4.008 20 C -0.070 4.070 21 C -0.196 4.196 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.246 0.754 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 6.462 -15.439 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.182 1.182 13 N -0.347 5.347 14 C 0.357 3.643 15 O -0.473 6.473 16 C -0.264 4.264 17 C -0.033 4.033 18 O -0.069 6.069 19 C -0.057 4.057 20 C -0.126 4.126 21 C -0.216 4.216 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.262 0.738 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.647 6.409 -14.886 17.163 hybrid contribution 1.028 -0.282 0.806 1.336 sum -4.620 6.127 -14.080 16.036 Atomic orbital electron populations 1.21684 0.97241 0.99143 1.00089 1.21788 0.93529 0.99107 1.01490 1.18417 0.93914 0.89173 0.81054 0.98512 1.21567 0.91118 1.39191 1.06762 0.90746 1.25790 1.03430 0.94294 0.94959 1.70058 1.37167 1.38382 1.09777 0.85341 0.78919 0.77355 0.78687 1.20543 1.21015 1.18223 1.46096 1.14899 1.55883 1.17796 1.17774 0.81935 0.77955 0.86635 1.90713 1.52798 1.61902 1.41901 1.21655 0.98503 1.10275 0.95978 1.24941 0.97897 0.94826 0.85678 1.83746 1.24551 1.58014 1.40601 1.22950 0.86445 1.02493 0.93765 1.20527 0.92528 0.99240 1.00314 1.22616 0.98224 1.03662 0.97066 0.95646 0.94157 0.93403 0.93774 0.90801 0.92580 0.76213 0.73818 0.88488 0.88785 0.87965 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.51 71.98 0.61 -5.22 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.49 2.24 44.25 0.10 14.59 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.83 5.30 84.66 0.45 1.27 16 8 N -0.92 -52.56 11.30 21.45 0.24 -52.32 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 13 N -0.70 -29.66 5.01 -449.44 -2.25 -31.91 16 14 C 0.57 24.51 6.38 86.65 0.55 25.06 16 15 O -0.59 -30.52 14.12 -4.07 -0.06 -30.57 16 16 C -0.26 -8.73 6.31 -18.99 -0.12 -8.85 16 17 C 0.04 0.91 11.61 67.39 0.78 1.69 16 18 O -0.17 -4.07 10.52 4.41 0.05 -4.03 16 19 C -0.01 -0.18 7.28 24.76 0.18 0.00 16 20 C -0.07 -0.88 10.40 71.24 0.74 -0.14 16 21 C -0.20 -5.85 10.90 23.65 0.26 -5.59 16 22 H 0.02 1.28 7.84 -2.39 -0.02 1.26 16 23 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 4.12 5.96 -2.39 -0.01 4.10 16 27 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.40 13.93 7.51 -92.71 -0.70 13.23 16 29 H 0.25 4.06 7.47 -2.91 -0.02 4.03 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -70.70 281.75 4.37 -66.33 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.42 Total: 20.44 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 3.94 Total: -11.75 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.01 Total: -84.23 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.01 Total: -34.60 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.70 4.37 -66.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130326458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.439 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds