Wall clock time and date at job start Sun Mar 29 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47533 * 2 1 4 4 H 1.08997 * 109.47450 * 304.90180 * 3 2 1 5 5 C 1.50698 * 109.47228 * 184.90146 * 3 2 1 6 6 H 1.08003 * 120.00194 * 245.45303 * 5 3 2 7 7 C 1.37880 * 120.00197 * 65.45502 * 5 3 2 8 8 N 1.31515 * 119.99599 * 9.47140 * 7 5 3 9 9 Si 1.86799 * 120.00171 * 189.46947 * 7 5 3 10 10 H 1.48499 * 109.47297 * 84.99549 * 9 7 5 11 11 H 1.48505 * 109.47039 * 204.99593 * 9 7 5 12 12 H 1.48502 * 109.47261 * 324.99075 * 9 7 5 13 13 N 1.46500 * 109.46803 * 64.90552 * 3 2 1 14 14 C 1.34778 * 119.99812 * 274.99440 * 13 3 2 15 15 O 1.21615 * 120.00298 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00070 * 179.97438 * 14 13 3 17 17 C 1.36421 * 127.18986 * 359.97438 * 16 14 13 18 18 O 1.33652 * 108.39341 * 180.02562 * 17 16 14 19 19 C 1.34213 * 110.90958 * 359.97438 * 18 17 16 20 20 C 1.50701 * 125.43911 * 179.97438 * 19 18 17 21 21 C 1.34174 * 109.12673 * 0.02562 * 19 18 17 22 22 H 1.08998 * 109.46516 * 299.99752 * 1 2 3 23 23 H 1.08994 * 109.47040 * 59.99545 * 1 2 3 24 24 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46960 * 240.00000 * 2 1 3 26 26 H 1.09004 * 109.47107 * 120.00973 * 2 1 3 27 27 H 0.96996 * 119.99679 * 180.02562 * 8 7 5 28 28 H 0.97005 * 120.00410 * 94.99864 * 13 3 2 29 29 H 1.07994 * 125.80157 * 0.02562 * 17 16 14 30 30 H 1.09005 * 109.46861 * 0.03361 * 20 19 18 31 31 H 1.08996 * 109.46944 * 120.02584 * 20 19 18 32 32 H 1.08992 * 109.47598 * 240.03233 * 20 19 18 33 33 H 1.08002 * 127.02622 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 -0.8428 5 6 3.5422 1.4440 -0.1214 6 1 4.1495 1.8088 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9920 0.7325 -1.3290 10 1 6.3290 -0.6070 -0.7837 11 1 6.4619 0.8273 -2.7346 12 1 6.6563 1.7806 -0.5133 13 7 1.6506 2.0980 1.2509 14 6 0.4332 2.6651 1.3637 15 8 -0.3422 2.6322 0.4274 16 6 0.0410 3.3242 2.6223 17 6 0.7881 3.4451 3.7574 18 8 0.0683 4.1087 4.6673 19 6 -1.1375 4.4369 4.1777 20 6 -2.2092 5.1879 4.9251 21 6 -1.2370 3.9886 2.9170 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 3.8311 0.3846 -3.1428 28 1 2.2689 2.1240 1.9979 29 1 1.7906 3.0687 3.8970 30 1 -1.8542 5.4255 5.9279 31 1 -2.4434 6.1107 4.3945 32 1 -3.1049 4.5707 4.9935 33 1 -2.0831 4.0940 2.2541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130326678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:25 Heat of formation + Delta-G solvation = -37.014901 kcal Electronic energy + Delta-G solvation = -16640.874878 eV Core-core repulsion = 13860.952828 eV Total energy + Delta-G solvation = -2779.922050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38284 -38.72638 -35.00280 -32.94812 -32.57814 -31.84881 -30.66343 -27.22866 -26.36779 -23.70426 -22.56586 -20.87477 -19.91395 -19.08073 -17.65125 -16.43796 -16.18256 -15.41295 -15.21017 -14.44592 -14.34556 -13.85788 -13.23704 -13.13943 -12.92645 -12.70333 -12.57440 -12.07290 -11.78196 -11.46659 -11.34488 -11.00899 -10.78401 -10.34811 -10.20172 -9.71350 -9.48452 -9.11405 -9.07494 -8.47762 -8.45997 -7.83048 -6.14523 -4.20068 1.62506 2.23907 2.93310 3.25157 3.31993 3.33121 4.05361 4.08679 4.38280 4.68709 4.94992 5.11261 5.18607 5.31885 5.35157 5.56984 5.84423 5.89813 6.12979 6.36391 6.41470 6.49077 6.61801 7.01162 7.12548 7.18730 7.33434 7.42347 7.62164 7.72210 7.85173 8.07548 8.67837 8.80071 9.14895 9.45925 10.93767 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.005809 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.064808 B = 4819.236273 C = 5278.174631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.569 3.431 15 O -0.544 6.544 16 C -0.216 4.216 17 C 0.005 3.995 18 O -0.178 6.178 19 C -0.027 4.027 20 C -0.070 4.070 21 C -0.164 4.164 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.023 0.977 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.385 0.615 29 H 0.211 0.789 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 5.204 13.076 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.355 3.645 15 O -0.423 6.423 16 C -0.221 4.221 17 C -0.065 4.065 18 O -0.075 6.075 19 C -0.076 4.076 20 C -0.126 4.126 21 C -0.183 4.183 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.217 0.783 29 H 0.228 0.772 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.703 5.173 12.449 15.055 hybrid contribution 1.389 -0.316 0.029 1.425 sum -5.313 4.857 12.478 14.406 Atomic orbital electron populations 1.21852 0.98019 0.98179 1.01608 1.21852 0.93012 0.99809 1.01181 1.18821 0.94389 0.88922 0.81154 0.92475 1.21163 0.90495 1.44138 1.01843 0.92102 1.24884 0.98464 0.95131 0.94956 1.69986 1.35767 1.43654 1.02145 0.86528 0.84986 0.78700 0.77280 1.20418 1.21165 1.19919 1.46370 1.14216 1.55958 1.18545 1.17252 0.82767 0.78772 0.85723 1.90749 1.51704 1.60152 1.39703 1.21931 0.96309 1.07443 0.96420 1.24414 0.97431 0.97354 0.87274 1.83683 1.24341 1.58339 1.41122 1.22233 0.86373 1.04404 0.94550 1.20273 0.93552 0.99020 0.99801 1.22497 0.98395 1.01843 0.95598 0.93979 0.92928 0.95757 0.90188 0.94695 0.92531 0.78299 0.77238 0.90697 0.89760 0.89777 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.12 -2.89 5.50 -26.73 -0.15 -3.04 16 3 C 0.27 6.80 2.11 -69.09 -0.15 6.65 16 4 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 5 C -0.54 -14.17 8.66 -34.44 -0.30 -14.46 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.88 12.16 55.43 0.67 -24.21 16 9 Si 0.90 20.52 29.55 -169.99 -5.02 15.50 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.81 5.01 -56.03 -0.28 -15.09 16 14 C 0.57 11.99 6.38 -12.54 -0.08 11.91 16 15 O -0.54 -13.37 14.12 5.26 0.07 -13.30 16 16 C -0.22 -3.70 6.31 -103.27 -0.65 -4.35 16 17 C 0.00 0.07 11.61 30.08 0.35 0.42 16 18 O -0.18 -2.38 10.52 7.66 0.08 -2.30 16 19 C -0.03 -0.34 7.28 -35.74 -0.26 -0.60 16 20 C -0.07 -0.56 10.40 36.01 0.37 -0.18 16 21 C -0.16 -2.49 10.90 -37.46 -0.41 -2.89 16 22 H 0.04 0.94 5.65 -51.93 -0.29 0.64 16 23 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 2.11 6.80 -51.93 -0.35 1.76 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.38 6.86 7.50 -40.82 -0.31 6.55 16 29 H 0.21 2.14 7.47 -52.49 -0.39 1.75 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -31.66 283.09 -5.47 -37.13 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.22 Total: 5.59 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.04 Total: -7.60 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.39 Total: -39.30 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.15 Total: -15.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.66 -5.47 -37.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130326678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.118 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds