Wall clock time and date at job start Sun Mar 29 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47533 * 2 1 4 4 H 1.08997 * 109.47450 * 304.90180 * 3 2 1 5 5 C 1.50698 * 109.47228 * 184.90146 * 3 2 1 6 6 H 1.08003 * 120.00194 * 245.45303 * 5 3 2 7 7 C 1.37880 * 120.00197 * 65.45502 * 5 3 2 8 8 N 1.31515 * 119.99599 * 9.47140 * 7 5 3 9 9 Si 1.86799 * 120.00171 * 189.46947 * 7 5 3 10 10 H 1.48499 * 109.47297 * 84.99549 * 9 7 5 11 11 H 1.48505 * 109.47039 * 204.99593 * 9 7 5 12 12 H 1.48502 * 109.47261 * 324.99075 * 9 7 5 13 13 N 1.46500 * 109.46803 * 64.90552 * 3 2 1 14 14 C 1.34778 * 119.99812 * 274.99440 * 13 3 2 15 15 O 1.21615 * 120.00298 * 0.02562 * 14 13 3 16 16 C 1.47386 * 120.00070 * 179.97438 * 14 13 3 17 17 C 1.36421 * 127.18986 * 359.97438 * 16 14 13 18 18 O 1.33652 * 108.39341 * 180.02562 * 17 16 14 19 19 C 1.34213 * 110.90958 * 359.97438 * 18 17 16 20 20 C 1.50701 * 125.43911 * 179.97438 * 19 18 17 21 21 C 1.34174 * 109.12673 * 0.02562 * 19 18 17 22 22 H 1.08998 * 109.46516 * 299.99752 * 1 2 3 23 23 H 1.08994 * 109.47040 * 59.99545 * 1 2 3 24 24 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46960 * 240.00000 * 2 1 3 26 26 H 1.09004 * 109.47107 * 120.00973 * 2 1 3 27 27 H 0.96996 * 119.99679 * 180.02562 * 8 7 5 28 28 H 0.97005 * 120.00410 * 94.99864 * 13 3 2 29 29 H 1.07994 * 125.80157 * 0.02562 * 17 16 14 30 30 H 1.09005 * 109.46861 * 0.03361 * 20 19 18 31 31 H 1.08996 * 109.46944 * 120.02584 * 20 19 18 32 32 H 1.08992 * 109.47598 * 240.03233 * 20 19 18 33 33 H 1.08002 * 127.02622 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9810 -0.8428 5 6 3.5422 1.4440 -0.1214 6 1 4.1495 1.8088 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 3.4097 0.7115 -2.3326 9 14 5.9920 0.7325 -1.3290 10 1 6.3290 -0.6070 -0.7837 11 1 6.4619 0.8273 -2.7346 12 1 6.6563 1.7806 -0.5133 13 7 1.6506 2.0980 1.2509 14 6 0.4332 2.6651 1.3637 15 8 -0.3422 2.6322 0.4274 16 6 0.0410 3.3242 2.6223 17 6 0.7881 3.4451 3.7574 18 8 0.0683 4.1087 4.6673 19 6 -1.1375 4.4369 4.1777 20 6 -2.2092 5.1879 4.9251 21 6 -1.2370 3.9886 2.9170 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5140 0.8899 27 1 3.8311 0.3846 -3.1428 28 1 2.2689 2.1240 1.9979 29 1 1.7906 3.0687 3.8970 30 1 -1.8542 5.4255 5.9279 31 1 -2.4434 6.1107 4.3945 32 1 -3.1049 4.5707 4.9935 33 1 -2.0831 4.0940 2.2541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130326678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:25 Heat of formation + Delta-G solvation = -58.468207 kcal Electronic energy + Delta-G solvation = -16641.805163 eV Core-core repulsion = 13860.952828 eV Total energy + Delta-G solvation = -2780.852335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49209 -40.45777 -36.90551 -34.42345 -34.01229 -33.33977 -32.22372 -29.05707 -27.43521 -25.42007 -24.27367 -22.06306 -21.71656 -20.72785 -18.98187 -18.08366 -17.29758 -17.15981 -16.87659 -16.13457 -16.05342 -15.27025 -14.63603 -14.41008 -13.99930 -13.88038 -13.73989 -13.71821 -13.45046 -13.29313 -12.93655 -12.65715 -12.61538 -12.20948 -12.08729 -11.65437 -11.10872 -10.84368 -10.75311 -10.53096 -9.71640 -9.47348 -8.19078 -6.32603 0.43615 1.08748 1.45809 1.47017 1.56435 1.92401 2.35485 2.50439 2.62028 3.12860 3.71088 3.74568 4.14492 4.44390 4.46164 4.51119 4.58274 4.72236 4.77086 4.80590 4.93067 5.03653 5.13595 5.22585 5.40036 5.44194 5.50219 5.60553 5.73266 5.90817 6.04651 6.06071 6.75326 6.97032 7.33093 7.54748 8.89942 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.005809 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.064808 B = 4819.236273 C = 5278.174631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.568 3.432 15 O -0.590 6.590 16 C -0.259 4.259 17 C 0.036 3.964 18 O -0.173 6.173 19 C -0.008 4.008 20 C -0.070 4.070 21 C -0.197 4.197 22 H 0.042 0.958 23 H 0.024 0.976 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.246 0.754 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 5.596 15.958 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.173 3.827 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.357 3.643 15 O -0.473 6.473 16 C -0.264 4.264 17 C -0.034 4.034 18 O -0.069 6.069 19 C -0.056 4.056 20 C -0.126 4.126 21 C -0.216 4.216 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.262 0.738 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.795 5.581 15.388 17.365 hybrid contribution 1.043 -0.373 -0.818 1.377 sum -4.752 5.208 14.570 16.186 Atomic orbital electron populations 1.21689 0.96940 0.99362 1.00296 1.21706 0.93876 0.98963 1.00560 1.18426 0.93993 0.89064 0.81267 0.98049 1.21529 0.91043 1.43911 1.02322 0.90671 1.25794 1.03304 0.94724 0.94490 1.70144 1.37893 1.44668 1.02811 0.85399 0.79013 0.79086 0.77085 1.19483 1.21529 1.18685 1.46085 1.14903 1.55889 1.17776 1.17778 0.81942 0.77952 0.86630 1.90717 1.52930 1.61874 1.41780 1.21655 0.98542 1.10274 0.95907 1.24943 0.97903 0.94830 0.85690 1.83752 1.24604 1.57798 1.40734 1.22942 0.86441 1.02518 0.93732 1.20526 0.92488 0.99295 1.00318 1.22593 0.98160 1.03744 0.97132 0.93894 0.95629 0.93141 0.92819 0.93005 0.92612 0.76200 0.73788 0.88842 0.88232 0.88135 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.11 -5.51 5.50 30.59 0.17 -5.35 16 3 C 0.28 14.34 2.11 44.24 0.09 14.44 16 4 H 0.00 0.10 7.52 -2.39 -0.02 0.08 16 5 C -0.55 -29.00 8.66 25.60 0.22 -28.78 16 6 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.94 5.16 84.66 0.44 1.37 16 8 N -0.92 -53.43 12.16 21.45 0.26 -53.17 16 9 Si 0.97 41.83 29.55 68.60 2.03 43.86 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 N -0.70 -29.51 5.01 -449.42 -2.25 -31.77 16 14 C 0.57 24.47 6.38 86.65 0.55 25.02 16 15 O -0.59 -30.54 14.12 -4.08 -0.06 -30.60 16 16 C -0.26 -8.70 6.31 -18.99 -0.12 -8.82 16 17 C 0.04 0.90 11.61 67.40 0.78 1.68 16 18 O -0.17 -4.05 10.52 4.49 0.05 -4.01 16 19 C -0.01 -0.18 7.28 24.76 0.18 0.00 16 20 C -0.07 -0.88 10.40 71.24 0.74 -0.14 16 21 C -0.20 -5.87 10.90 23.65 0.26 -5.61 16 22 H 0.04 1.95 5.65 -2.39 -0.01 1.93 16 23 H 0.02 1.27 7.84 -2.39 -0.02 1.26 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 2.92 6.80 -2.39 -0.02 2.90 16 26 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.40 13.80 7.50 -92.70 -0.69 13.11 16 29 H 0.25 4.01 7.47 -2.91 -0.02 3.99 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -71.46 283.09 4.38 -67.08 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.42 Total: 19.95 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 3.93 Total: -11.36 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.99 Total: -84.93 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.01 Total: -34.60 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.46 4.38 -67.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130326678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.617 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds