Wall clock time and date at job start Sun Mar 29 2020 22:38:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53007 * 109.47081 * 2 1
4 4 H 1.08993 * 109.47294 * 54.99859 * 3 2 1
5 5 C 1.50704 * 109.46998 * 174.99874 * 3 2 1
6 6 H 1.08000 * 119.99354 * 119.99800 * 5 3 2
7 7 C 1.37869 * 120.00275 * 299.99834 * 5 3 2
8 8 N 1.31511 * 120.00525 * 179.97438 * 7 5 3
9 9 Si 1.86811 * 119.99703 * 0.02562 * 7 5 3
10 10 H 1.48495 * 109.47108 * 90.00390 * 9 7 5
11 11 H 1.48500 * 109.46689 * 209.99851 * 9 7 5
12 12 H 1.48494 * 109.47204 * 329.99927 * 9 7 5
13 13 N 1.46503 * 109.46918 * 294.99849 * 3 2 1
14 14 C 1.34777 * 119.99907 * 84.99832 * 13 3 2
15 15 O 1.21284 * 119.99941 * 0.02562 * 14 13 3
16 16 C 1.50700 * 119.99946 * 179.97438 * 14 13 3
17 17 C 1.50701 * 109.46955 * 180.02562 * 16 14 13
18 18 C 1.41381 * 126.57424 * 90.00355 * 17 16 14
19 19 C 1.34520 * 106.83580 * 179.72986 * 18 17 16
20 20 O 1.34302 * 108.42210 * 0.26485 * 19 18 17
21 21 C 1.34302 * 109.47622 * 359.97438 * 20 19 18
22 22 H 1.08999 * 109.47104 * 60.00147 * 1 2 3
23 23 H 1.08994 * 109.46917 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.46733 * 300.00020 * 1 2 3
25 25 H 1.08993 * 109.47243 * 239.99810 * 2 1 3
26 26 H 1.08999 * 109.47104 * 119.99853 * 2 1 3
27 27 H 0.96998 * 120.00437 * 179.97438 * 8 7 5
28 28 H 0.96996 * 119.99724 * 265.00504 * 13 3 2
29 29 H 1.09007 * 109.46960 * 60.00376 * 16 14 13
30 30 H 1.08999 * 109.46970 * 300.00269 * 16 14 13
31 31 H 1.08002 * 126.58570 * 359.97438 * 18 17 16
32 32 H 1.08004 * 125.78733 * 180.22473 * 19 18 17
33 33 H 1.07999 * 125.79201 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6054 1.9816 0.8417
5 6 3.5420 1.4443 0.1239
6 1 4.1472 1.8889 -0.6523
7 6 4.1433 0.8785 1.2279
8 7 5.4540 0.8796 1.3358
9 14 3.0963 0.1090 2.5701
10 1 2.8756 -1.3271 2.2635
11 1 3.7936 0.2349 3.8751
12 1 1.7877 0.8074 2.6387
13 7 1.6525 2.0975 -1.2519
14 6 0.4351 2.6643 -1.3670
15 8 -0.3393 2.6326 -0.4342
16 6 0.0367 3.3386 -2.6546
17 6 -1.3609 3.8868 -2.5229
18 6 -1.7207 5.1753 -2.0655
19 6 -3.0632 5.2452 -2.1141
20 8 -3.5331 4.0720 -2.5684
21 6 -2.5054 3.2433 -2.8150
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5138 -0.8899
26 1 1.8934 -0.5138 0.8900
27 1 5.8771 0.4818 2.1128
28 1 2.2720 2.1231 -1.9978
29 1 0.0680 2.6144 -3.4687
30 1 0.7281 4.1540 -2.8668
31 1 -1.0469 5.9554 -1.7432
32 1 -3.6617 6.0996 -1.8344
33 1 -2.5842 2.2328 -3.1880
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000131993490.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:38:37
Heat of formation + Delta-G solvation = -24.492977 kcal
Electronic energy + Delta-G solvation = -16805.579763 eV
Core-core repulsion = 14026.200704 eV
Total energy + Delta-G solvation = -2779.379058 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-42.42647 -39.11726 -35.42214 -33.71703 -32.36811 -31.57253 -30.15373 -28.06270
-26.89778 -22.71721 -21.52215 -21.35908 -20.04731 -19.48769 -17.52412 -17.08208
-16.02816 -15.66003 -15.49029 -15.03071 -14.51546 -14.17168 -13.50342 -13.08081
-12.84624 -12.69483 -12.38054 -12.24447 -11.91802 -11.75008 -11.29309 -11.04193
-10.86913 -10.61894 -9.91766 -9.69038 -9.53174 -9.21305 -9.01772 -8.74482
-8.40005 -8.01826 -6.20718 -4.22934 1.88376 2.69316 3.23429 3.23732
3.31791 3.35766 3.41414 4.15910 4.32205 4.85966 4.91773 5.11837
5.13893 5.51727 5.53909 5.64148 5.82068 5.97867 6.03407 6.12018
6.19705 6.25662 6.58534 6.66964 6.71544 6.86807 6.97525 7.20651
7.29657 7.34128 7.54522 8.18473 8.56902 8.77381 9.01893 9.40871
10.91410
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.044434 B = 0.005995 C = 0.005741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 629.993802 B = 4669.756471 C = 4876.108372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.138 4.138
3 C 0.242 3.758
4 H 0.048 0.952
5 C -0.534 4.534
6 H 0.080 0.920
7 C 0.078 3.922
8 N -0.893 5.893
9 Si 0.883 3.117
10 H -0.276 1.276
11 H -0.294 1.294
12 H -0.260 1.260
13 N -0.704 5.704
14 C 0.502 3.498
15 O -0.542 6.542
16 C -0.076 4.076
17 C -0.152 4.152
18 C -0.196 4.196
19 C -0.051 4.051
20 O -0.180 6.180
21 C -0.034 4.034
22 H 0.052 0.948
23 H 0.030 0.970
24 H 0.051 0.949
25 H 0.058 0.942
26 H 0.053 0.947
27 H 0.267 0.733
28 H 0.394 0.606
29 H 0.095 0.905
30 H 0.098 0.902
31 H 0.145 0.855
32 H 0.199 0.801
33 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.777 4.774 -9.074 16.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.177 4.177
3 C 0.139 3.861
4 H 0.066 0.934
5 C -0.572 4.572
6 H 0.098 0.902
7 C -0.125 4.125
8 N -0.530 5.530
9 Si 0.712 3.288
10 H -0.203 1.203
11 H -0.222 1.222
12 H -0.185 1.185
13 N -0.352 5.352
14 C 0.287 3.713
15 O -0.421 6.421
16 C -0.116 4.116
17 C -0.154 4.154
18 C -0.215 4.215
19 C -0.118 4.118
20 O -0.076 6.076
21 C -0.101 4.101
22 H 0.071 0.929
23 H 0.049 0.951
24 H 0.071 0.929
25 H 0.077 0.923
26 H 0.071 0.929
27 H 0.077 0.923
28 H 0.227 0.773
29 H 0.114 0.886
30 H 0.116 0.884
31 H 0.163 0.837
32 H 0.216 0.784
33 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges -13.453 4.624 -8.312 16.475
hybrid contribution 0.246 -0.445 0.509 0.720
sum -13.207 4.179 -7.803 15.899
Atomic orbital electron populations
1.21867 0.96967 0.98903 1.02269 1.22282 0.94325 1.00051 1.01019
1.19121 0.95509 0.88442 0.83051 0.93439 1.21067 0.88692 1.39679
1.07787 0.90220 1.24832 0.94845 0.95162 0.97671 1.69865 1.08689
1.44623 1.29827 0.86907 0.80990 0.79949 0.80912 1.20261 1.22185
1.18489 1.46168 1.14937 1.56234 1.17894 1.20366 0.82479 0.79223
0.89262 1.90677 1.51468 1.59410 1.40505 1.20070 0.93243 1.00988
0.97291 1.19855 0.94982 0.95062 1.05505 1.21686 0.95464 0.98348
1.06045 1.23884 0.94599 0.88660 1.04659 1.84027 1.36099 1.22280
1.65202 1.23730 0.84427 0.96134 1.05827 0.92928 0.95073 0.92947
0.92341 0.92879 0.92306 0.77273 0.88624 0.88355 0.83723 0.78449
0.78516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16
2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16
3 C 0.24 5.73 1.83 -69.08 -0.13 5.60 16
4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16
5 C -0.53 -14.39 9.31 -34.44 -0.32 -14.71 16
6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16
7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16
8 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16
9 Si 0.88 21.90 24.41 -169.99 -4.15 17.75 16
10 H -0.28 -6.63 6.83 56.52 0.39 -6.24 16
11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
12 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16
13 N -0.70 -13.60 5.02 -54.93 -0.28 -13.88 16
14 C 0.50 9.15 6.39 -10.98 -0.07 9.08 16
15 O -0.54 -11.91 13.17 5.55 0.07 -11.83 16
16 C -0.08 -1.01 6.22 -29.03 -0.18 -1.19 16
17 C -0.15 -2.14 4.66 -104.74 -0.49 -2.63 16
18 C -0.20 -2.61 10.87 -39.70 -0.43 -3.04 16
19 C -0.05 -0.60 12.09 29.42 0.36 -0.24 16
20 O -0.18 -2.39 10.65 5.71 0.06 -2.33 16
21 C -0.03 -0.44 12.01 29.42 0.35 -0.08 16
22 H 0.05 1.03 5.65 -51.93 -0.29 0.73 16
23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
24 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16
25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
26 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16
27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
28 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16
29 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16
30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16
31 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16
32 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16
33 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16
LS Contribution 275.04 15.07 4.14 4.14
Total: -1.00 -32.69 275.04 -4.32 -37.02
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -4.12 Total: 5.73 kcal
Atomic # 6 Polarization: -10.06 SS G_CDS: -0.83 Total: -10.89 kcal
Atomic # 7 Polarization: -40.09 SS G_CDS: 0.50 Total: -39.59 kcal
Atomic # 8 Polarization: -14.29 SS G_CDS: 0.13 Total: -14.16 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal
Total LS contribution 4.14 Total: 4.14 kcal
Total: -32.69 -4.32 -37.02 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000131993490.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.522 kcal
(2) G-P(sol) polarization free energy of solvation -32.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds