Wall clock time and date at job start Sun Mar 29 2020 22:38:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53007 * 109.47081 * 2 1
4 4 H 1.08993 * 109.47294 * 54.99859 * 3 2 1
5 5 C 1.50704 * 109.46998 * 174.99874 * 3 2 1
6 6 H 1.08000 * 119.99354 * 119.99800 * 5 3 2
7 7 C 1.37869 * 120.00275 * 299.99834 * 5 3 2
8 8 N 1.31511 * 120.00525 * 179.97438 * 7 5 3
9 9 Si 1.86811 * 119.99703 * 0.02562 * 7 5 3
10 10 H 1.48495 * 109.47108 * 90.00390 * 9 7 5
11 11 H 1.48500 * 109.46689 * 209.99851 * 9 7 5
12 12 H 1.48494 * 109.47204 * 329.99927 * 9 7 5
13 13 N 1.46503 * 109.46918 * 294.99849 * 3 2 1
14 14 C 1.34777 * 119.99907 * 84.99832 * 13 3 2
15 15 O 1.21284 * 119.99941 * 0.02562 * 14 13 3
16 16 C 1.50700 * 119.99946 * 179.97438 * 14 13 3
17 17 C 1.50701 * 109.46955 * 180.02562 * 16 14 13
18 18 C 1.41381 * 126.57424 * 90.00355 * 17 16 14
19 19 C 1.34520 * 106.83580 * 179.72986 * 18 17 16
20 20 O 1.34302 * 108.42210 * 0.26485 * 19 18 17
21 21 C 1.34302 * 109.47622 * 359.97438 * 20 19 18
22 22 H 1.08999 * 109.47104 * 60.00147 * 1 2 3
23 23 H 1.08994 * 109.46917 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.46733 * 300.00020 * 1 2 3
25 25 H 1.08993 * 109.47243 * 239.99810 * 2 1 3
26 26 H 1.08999 * 109.47104 * 119.99853 * 2 1 3
27 27 H 0.96998 * 120.00437 * 179.97438 * 8 7 5
28 28 H 0.96996 * 119.99724 * 265.00504 * 13 3 2
29 29 H 1.09007 * 109.46960 * 60.00376 * 16 14 13
30 30 H 1.08999 * 109.46970 * 300.00269 * 16 14 13
31 31 H 1.08002 * 126.58570 * 359.97438 * 18 17 16
32 32 H 1.08004 * 125.78733 * 180.22473 * 19 18 17
33 33 H 1.07999 * 125.79201 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6054 1.9816 0.8417
5 6 3.5420 1.4443 0.1239
6 1 4.1472 1.8889 -0.6523
7 6 4.1433 0.8785 1.2279
8 7 5.4540 0.8796 1.3358
9 14 3.0963 0.1090 2.5701
10 1 2.8756 -1.3271 2.2635
11 1 3.7936 0.2349 3.8751
12 1 1.7877 0.8074 2.6387
13 7 1.6525 2.0975 -1.2519
14 6 0.4351 2.6643 -1.3670
15 8 -0.3393 2.6326 -0.4342
16 6 0.0367 3.3386 -2.6546
17 6 -1.3609 3.8868 -2.5229
18 6 -1.7207 5.1753 -2.0655
19 6 -3.0632 5.2452 -2.1141
20 8 -3.5331 4.0720 -2.5684
21 6 -2.5054 3.2433 -2.8150
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5138 -0.8899
26 1 1.8934 -0.5138 0.8900
27 1 5.8771 0.4818 2.1128
28 1 2.2720 2.1231 -1.9978
29 1 0.0680 2.6144 -3.4687
30 1 0.7281 4.1540 -2.8668
31 1 -1.0469 5.9554 -1.7432
32 1 -3.6617 6.0996 -1.8344
33 1 -2.5842 2.2328 -3.1880
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000131993490.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:38:37
Heat of formation + Delta-G solvation = -47.969947 kcal
Electronic energy + Delta-G solvation = -16806.597800 eV
Core-core repulsion = 14026.200704 eV
Total energy + Delta-G solvation = -2780.397096 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 237.115 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-43.37878 -40.65503 -37.14795 -34.82466 -34.37282 -33.21887 -31.19301 -29.62846
-28.32080 -24.61116 -22.88486 -22.42140 -21.43104 -20.92193 -19.14396 -18.30031
-17.57419 -17.40018 -16.65769 -16.42907 -15.98091 -15.46738 -15.15971 -14.66710
-14.44540 -13.90718 -13.73905 -13.63110 -13.52674 -13.23582 -12.92313 -12.76420
-12.43745 -12.28114 -11.85471 -11.37442 -11.22651 -10.86552 -10.84541 -10.38780
-9.70048 -9.36151 -8.38369 -6.43202 0.94243 1.25545 1.34005 1.43804
1.67668 1.89223 2.25381 2.36159 2.72366 2.97794 3.88182 4.01535
4.15413 4.23631 4.27328 4.33966 4.51575 4.61436 4.69555 4.83471
4.88803 5.01808 5.14017 5.17745 5.25019 5.35969 5.43498 5.53317
5.63699 5.72623 6.16859 6.25733 6.59580 6.98058 7.21053 7.57925
8.76889
Molecular weight = 237.12amu
Principal moments of inertia in cm(-1)
A = 0.044434 B = 0.005995 C = 0.005741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 629.993802 B = 4669.756471 C = 4876.108372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.137 4.137
3 C 0.249 3.751
4 H 0.017 0.983
5 C -0.532 4.532
6 H 0.058 0.942
7 C 0.030 3.970
8 N -0.934 5.934
9 Si 0.935 3.065
10 H -0.259 1.259
11 H -0.294 1.294
12 H -0.264 1.264
13 N -0.703 5.703
14 C 0.501 3.499
15 O -0.580 6.580
16 C -0.063 4.063
17 C -0.178 4.178
18 C -0.225 4.225
19 C -0.046 4.046
20 O -0.190 6.190
21 C -0.039 4.039
22 H 0.058 0.942
23 H 0.057 0.943
24 H 0.031 0.969
25 H 0.070 0.930
26 H 0.040 0.960
27 H 0.270 0.730
28 H 0.407 0.593
29 H 0.129 0.871
30 H 0.116 0.884
31 H 0.150 0.850
32 H 0.234 0.766
33 H 0.222 0.778
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.445 4.460 -10.078 18.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.175 4.175
3 C 0.144 3.856
4 H 0.035 0.965
5 C -0.570 4.570
6 H 0.076 0.924
7 C -0.170 4.170
8 N -0.573 5.573
9 Si 0.763 3.237
10 H -0.185 1.185
11 H -0.221 1.221
12 H -0.188 1.188
13 N -0.353 5.353
14 C 0.289 3.711
15 O -0.461 6.461
16 C -0.102 4.102
17 C -0.180 4.180
18 C -0.244 4.244
19 C -0.112 4.112
20 O -0.086 6.086
21 C -0.106 4.106
22 H 0.077 0.923
23 H 0.076 0.924
24 H 0.050 0.950
25 H 0.089 0.911
26 H 0.059 0.941
27 H 0.079 0.921
28 H 0.242 0.758
29 H 0.147 0.853
30 H 0.135 0.865
31 H 0.168 0.832
32 H 0.250 0.750
33 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges -15.124 4.316 -9.355 18.300
hybrid contribution 0.757 -0.253 0.773 1.111
sum -14.367 4.062 -8.582 17.221
Atomic orbital electron populations
1.21747 0.95211 1.00415 1.01570 1.22198 0.95820 0.98537 1.00962
1.18735 0.93019 0.89643 0.84193 0.96502 1.21324 0.90475 1.38309
1.06864 0.92431 1.25525 0.95669 0.95956 0.99811 1.69970 1.10218
1.46305 1.30847 0.86054 0.79213 0.79974 0.78467 1.18523 1.22127
1.18846 1.46019 1.16010 1.56442 1.16845 1.21197 0.81234 0.78161
0.90519 1.90662 1.52399 1.60635 1.42361 1.20042 0.93340 1.01838
0.95025 1.20094 0.95508 0.95717 1.06640 1.21974 0.96515 0.98727
1.07184 1.24583 0.94679 0.88929 1.03030 1.84041 1.36448 1.22828
1.65270 1.24249 0.84127 0.96979 1.05274 0.92322 0.92370 0.94967
0.91101 0.94141 0.92118 0.75780 0.85304 0.86546 0.83222 0.74974
0.76171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.07 8.52 71.98 0.61 -4.46 16
2 C -0.14 -5.86 5.11 30.60 0.16 -5.70 16
3 C 0.25 11.69 1.83 44.25 0.08 11.77 16
4 H 0.02 0.91 6.64 -2.39 -0.02 0.89 16
5 C -0.53 -28.87 9.31 25.60 0.24 -28.63 16
6 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16
7 C 0.03 1.70 5.45 84.65 0.46 2.16 16
8 N -0.93 -56.16 13.96 21.44 0.30 -55.86 16
9 Si 0.94 45.25 24.41 68.60 1.67 46.93 16
10 H -0.26 -11.79 6.83 99.48 0.68 -11.11 16
11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16
12 H -0.26 -12.80 6.53 99.48 0.65 -12.15 16
13 N -0.70 -26.39 5.02 -446.08 -2.24 -28.63 16
14 C 0.50 17.52 6.39 87.66 0.56 18.08 16
15 O -0.58 -24.98 13.17 -3.04 -0.04 -25.02 16
16 C -0.06 -1.51 6.22 29.10 0.18 -1.33 16
17 C -0.18 -4.63 4.66 -19.94 -0.09 -4.72 16
18 C -0.22 -5.63 10.87 22.19 0.24 -5.39 16
19 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16
20 O -0.19 -4.64 10.65 -2.47 -0.03 -4.66 16
21 C -0.04 -0.93 12.01 66.97 0.80 -0.12 16
22 H 0.06 2.16 5.65 -2.39 -0.01 2.15 16
23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16
24 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16
25 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16
26 H 0.04 1.83 3.21 -2.39 -0.01 1.83 16
27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
28 H 0.41 13.12 8.54 -92.71 -0.79 12.33 16
29 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16
30 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16
31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16
32 H 0.23 2.94 8.06 -2.91 -0.02 2.91 16
33 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16
Total: -1.00 -70.67 275.04 3.97 -66.71
By element:
Atomic # 1 Polarization: 18.82 SS G_CDS: 0.25 Total: 19.07 kcal
Atomic # 6 Polarization: -22.58 SS G_CDS: 4.05 Total: -18.52 kcal
Atomic # 7 Polarization: -82.55 SS G_CDS: -1.94 Total: -84.49 kcal
Atomic # 8 Polarization: -29.62 SS G_CDS: -0.07 Total: -29.68 kcal
Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.93 kcal
Total: -70.67 3.97 -66.71 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000131993490.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.737 kcal
(2) G-P(sol) polarization free energy of solvation -70.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds