Wall clock time and date at job start Sun Mar 29 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47498 * 2 1 4 4 H 1.09000 * 109.46972 * 305.00108 * 3 2 1 5 5 C 1.50699 * 109.47546 * 185.00081 * 3 2 1 6 6 H 1.07999 * 120.00087 * 240.00338 * 5 3 2 7 7 C 1.37878 * 120.00063 * 59.99788 * 5 3 2 8 8 N 1.31516 * 119.99804 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00225 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46863 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46999 * 120.00190 * 9 7 5 12 12 H 1.48495 * 109.46913 * 240.00402 * 9 7 5 13 13 N 1.46501 * 109.46894 * 65.00128 * 3 2 1 14 14 C 1.34781 * 119.99997 * 275.00046 * 13 3 2 15 15 O 1.21278 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99937 * 180.02562 * 14 13 3 17 17 C 1.50705 * 109.46666 * 180.02562 * 16 14 13 18 18 C 1.41376 * 126.58074 * 90.00205 * 17 16 14 19 19 C 1.34515 * 106.84242 * 179.97438 * 18 17 16 20 20 O 1.34305 * 108.41856 * 359.97438 * 19 18 17 21 21 C 1.34298 * 109.47744 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47032 * 299.99953 * 1 2 3 24 24 H 1.09002 * 109.46631 * 59.99717 * 1 2 3 25 25 H 1.09007 * 109.47182 * 239.99776 * 2 1 3 26 26 H 1.08999 * 109.47439 * 120.00709 * 2 1 3 27 27 H 0.97003 * 120.00172 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00120 * 95.00084 * 13 3 2 29 29 H 1.09002 * 109.47311 * 60.00098 * 16 14 13 30 30 H 1.08997 * 109.46957 * 299.99907 * 16 14 13 31 31 H 1.08003 * 126.58479 * 359.94195 * 18 17 16 32 32 H 1.07996 * 125.79220 * 179.73892 * 19 18 17 33 33 H 1.08001 * 125.79115 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8799 -1.3812 10 1 6.5989 1.5441 -0.1931 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6092 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0368 3.3386 2.6546 17 6 -1.3612 3.8859 2.5232 18 6 -2.5633 3.2098 2.8340 19 6 -3.5695 4.0628 2.5704 20 8 -3.0433 5.2134 2.1196 21 6 -1.7046 5.1117 2.0887 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8293 -0.0611 -2.9499 28 1 2.2720 2.1230 1.9978 29 1 0.7283 4.1541 2.8668 30 1 0.0682 2.6145 3.4687 31 1 -2.6561 2.2017 3.2102 32 1 -4.6220 3.8561 2.6961 33 1 -1.0197 5.8836 1.7698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131993682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:39 Heat of formation + Delta-G solvation = -32.625235 kcal Electronic energy + Delta-G solvation = -16716.699362 eV Core-core repulsion = 13936.967663 eV Total energy + Delta-G solvation = -2779.731700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.35358 -38.88806 -35.13505 -33.61896 -32.33566 -31.04299 -30.00657 -27.84128 -26.46834 -23.02652 -21.43077 -21.02217 -19.79835 -19.23609 -17.42900 -16.88657 -15.88653 -15.44805 -15.16116 -14.79008 -14.56932 -14.10010 -13.20320 -12.84905 -12.71560 -12.63123 -12.21601 -11.95597 -11.54555 -11.24291 -11.11117 -10.94397 -10.81004 -10.29344 -10.15564 -9.60298 -9.59080 -9.02034 -8.88539 -8.48792 -8.31416 -7.76110 -6.11209 -4.20542 1.95603 2.76976 3.23796 3.30835 3.31806 3.34256 3.49736 4.23860 4.47363 4.93285 5.00542 5.19722 5.20937 5.59348 5.69066 5.71250 5.91112 6.19419 6.32679 6.41688 6.48911 6.65299 6.70182 7.06870 7.23278 7.27901 7.40617 7.51327 7.64559 7.77086 7.93207 8.20648 8.72988 8.81265 9.22051 9.47613 10.94155 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.005492 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.339091 B = 5097.230261 C = 5368.344381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.541 6.541 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.196 4.196 19 C -0.052 4.052 20 O -0.180 6.180 21 C -0.034 4.034 22 H 0.021 0.979 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.098 0.902 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.387 0.613 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.198 0.802 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 5.405 10.562 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.360 5.360 14 C 0.284 3.716 15 O -0.419 6.419 16 C -0.117 4.117 17 C -0.153 4.153 18 C -0.216 4.216 19 C -0.119 4.119 20 O -0.076 6.076 21 C -0.101 4.101 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.219 0.781 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.162 0.838 32 H 0.215 0.785 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.231 5.522 9.594 13.795 hybrid contribution 1.426 -0.363 0.252 1.493 sum -6.805 5.159 9.846 13.033 Atomic orbital electron populations 1.21830 0.98356 0.97897 1.01276 1.21928 0.92596 0.99910 1.02164 1.18756 0.94097 0.89145 0.81189 0.93430 1.21285 0.90804 1.38819 1.06206 0.92070 1.24896 0.98563 0.94860 0.95415 1.69911 1.35007 1.37741 1.09357 0.86413 0.84949 0.77757 0.78094 1.19754 1.20900 1.20906 1.46493 1.14709 1.56349 1.18467 1.20291 0.82686 0.79573 0.89021 1.90679 1.51284 1.59453 1.40504 1.20095 0.92805 1.00984 0.97829 1.19861 0.95258 0.94538 1.05627 1.21660 0.91929 1.01036 1.06938 1.23865 0.99256 0.84645 1.04122 1.84024 1.20833 1.36491 1.66274 1.23750 0.81403 0.99794 1.05179 0.95992 0.94216 0.93242 0.88399 0.95118 0.92650 0.78070 0.88774 0.88743 0.83844 0.78504 0.78462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -14.52 5.02 -54.93 -0.28 -14.80 16 14 C 0.50 9.75 6.39 -10.98 -0.07 9.68 16 15 O -0.54 -12.73 13.17 5.56 0.07 -12.66 16 16 C -0.08 -1.09 6.22 -29.03 -0.18 -1.28 16 17 C -0.15 -2.25 4.66 -104.74 -0.49 -2.74 16 18 C -0.20 -2.74 10.87 -39.71 -0.43 -3.17 16 19 C -0.05 -0.64 12.09 29.42 0.36 -0.29 16 20 O -0.18 -2.53 10.65 5.72 0.06 -2.46 16 21 C -0.03 -0.47 12.01 29.42 0.35 -0.12 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 24 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 25 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -31.67 281.80 -5.38 -37.05 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.25 Total: 7.28 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.84 Total: -9.97 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.35 Total: -39.01 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.13 Total: -15.12 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.67 -5.38 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131993682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.425 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds