Wall clock time and date at job start Sun Mar 29 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47498 * 2 1 4 4 H 1.09000 * 109.46972 * 305.00108 * 3 2 1 5 5 C 1.50699 * 109.47546 * 185.00081 * 3 2 1 6 6 H 1.07999 * 120.00087 * 240.00338 * 5 3 2 7 7 C 1.37878 * 120.00063 * 59.99788 * 5 3 2 8 8 N 1.31516 * 119.99804 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00225 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46863 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46999 * 120.00190 * 9 7 5 12 12 H 1.48495 * 109.46913 * 240.00402 * 9 7 5 13 13 N 1.46501 * 109.46894 * 65.00128 * 3 2 1 14 14 C 1.34781 * 119.99997 * 275.00046 * 13 3 2 15 15 O 1.21278 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99937 * 180.02562 * 14 13 3 17 17 C 1.50705 * 109.46666 * 180.02562 * 16 14 13 18 18 C 1.41376 * 126.58074 * 90.00205 * 17 16 14 19 19 C 1.34515 * 106.84242 * 179.97438 * 18 17 16 20 20 O 1.34305 * 108.41856 * 359.97438 * 19 18 17 21 21 C 1.34298 * 109.47744 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47032 * 299.99953 * 1 2 3 24 24 H 1.09002 * 109.46631 * 59.99717 * 1 2 3 25 25 H 1.09007 * 109.47182 * 239.99776 * 2 1 3 26 26 H 1.08999 * 109.47439 * 120.00709 * 2 1 3 27 27 H 0.97003 * 120.00172 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00120 * 95.00084 * 13 3 2 29 29 H 1.09002 * 109.47311 * 60.00098 * 16 14 13 30 30 H 1.08997 * 109.46957 * 299.99907 * 16 14 13 31 31 H 1.08003 * 126.58479 * 359.94195 * 18 17 16 32 32 H 1.07996 * 125.79220 * 179.73892 * 19 18 17 33 33 H 1.08001 * 125.79115 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0051 0.8799 -1.3812 10 1 6.5989 1.5441 -0.1931 11 1 6.4962 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6092 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0368 3.3386 2.6546 17 6 -1.3612 3.8859 2.5232 18 6 -2.5633 3.2098 2.8340 19 6 -3.5695 4.0628 2.5704 20 8 -3.0433 5.2134 2.1196 21 6 -1.7046 5.1117 2.0887 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8293 -0.0611 -2.9499 28 1 2.2720 2.1230 1.9978 29 1 0.7283 4.1541 2.8668 30 1 0.0682 2.6145 3.4687 31 1 -2.6561 2.2017 3.2102 32 1 -4.6220 3.8561 2.6961 33 1 -1.0197 5.8836 1.7698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131993682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:39 Heat of formation + Delta-G solvation = -53.929452 kcal Electronic energy + Delta-G solvation = -16717.623182 eV Core-core repulsion = 13936.967663 eV Total energy + Delta-G solvation = -2780.655520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.37475 -40.52755 -36.96313 -34.80668 -34.24545 -32.83297 -31.14975 -29.35332 -28.09589 -24.97365 -22.57552 -22.40908 -21.30151 -20.84448 -18.94876 -18.20764 -17.43693 -17.09220 -16.62710 -16.35507 -15.95252 -15.49080 -14.71839 -14.59966 -14.34820 -13.65687 -13.61044 -13.37334 -13.31652 -13.15220 -12.81506 -12.69981 -12.31623 -12.13439 -12.02712 -11.57481 -11.02646 -10.82187 -10.54798 -10.33792 -9.55695 -9.35951 -8.14867 -6.32160 0.94192 1.44664 1.45885 1.57567 1.69312 1.97181 2.36107 2.40143 2.88879 3.14898 3.90021 4.01927 4.18324 4.34487 4.49409 4.57712 4.62298 4.68736 4.77633 4.86355 5.07970 5.18015 5.27049 5.35880 5.45714 5.57846 5.63390 5.69379 5.82050 5.97645 6.19512 6.25941 6.77690 7.09343 7.36168 7.70182 8.90723 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.005492 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.339091 B = 5097.230261 C = 5368.344381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.708 5.708 14 C 0.496 3.504 15 O -0.586 6.586 16 C -0.062 4.062 17 C -0.176 4.176 18 C -0.222 4.222 19 C -0.046 4.046 20 O -0.191 6.191 21 C -0.044 4.044 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.404 0.596 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.235 0.765 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 5.775 12.431 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.466 6.466 16 C -0.102 4.102 17 C -0.178 4.178 18 C -0.241 4.241 19 C -0.113 4.113 20 O -0.087 6.087 21 C -0.112 4.112 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.239 0.761 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.171 0.829 32 H 0.252 0.748 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.798 5.907 11.513 15.108 hybrid contribution 1.213 -0.457 -0.340 1.340 sum -6.586 5.450 11.174 14.068 Atomic orbital electron populations 1.21657 0.97069 0.98929 1.00198 1.21779 0.93641 0.99379 1.01176 1.18319 0.93538 0.89068 0.81687 0.98751 1.21638 0.91508 1.38610 1.06581 0.90910 1.25788 1.03295 0.94454 0.95074 1.70068 1.37008 1.38594 1.09940 0.85324 0.79180 0.77771 0.78213 1.18289 1.20561 1.21134 1.46263 1.15762 1.56349 1.17424 1.21218 0.81488 0.78565 0.90345 1.90664 1.52406 1.60904 1.42659 1.20051 0.93184 1.01999 0.94965 1.20119 0.95806 0.95212 1.06656 1.21960 0.92209 1.01918 1.08023 1.24616 1.00763 0.83657 1.02252 1.84034 1.20971 1.37273 1.66374 1.24225 0.81764 1.00362 1.04816 0.93774 0.93559 0.95963 0.91275 0.93996 0.92697 0.76104 0.85800 0.86149 0.82910 0.74847 0.76538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.20 2.24 44.24 0.10 14.30 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.83 11.29 21.45 0.24 -52.59 16 9 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.71 -28.38 5.02 -446.10 -2.24 -30.62 16 14 C 0.50 18.96 6.39 87.66 0.56 19.52 16 15 O -0.59 -27.90 13.17 -3.02 -0.04 -27.94 16 16 C -0.06 -1.63 6.22 29.10 0.18 -1.45 16 17 C -0.18 -4.95 4.66 -19.94 -0.09 -5.05 16 18 C -0.22 -5.82 10.87 22.19 0.24 -5.58 16 19 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 20 O -0.19 -5.05 10.65 -2.45 -0.03 -5.08 16 21 C -0.04 -1.18 12.01 66.97 0.80 -0.37 16 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 24 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 25 H 0.07 3.86 5.95 -2.38 -0.01 3.84 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.40 13.39 8.54 -92.71 -0.79 12.59 16 29 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.24 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.22 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.91 281.80 4.34 -65.57 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.32 Total: 23.58 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.05 Total: -16.87 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.00 Total: -83.21 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.07 Total: -33.02 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -69.91 4.34 -65.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131993682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.643 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds