Wall clock time and date at job start Sun Mar 29 2020 22:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40365 * 126.43939 * 2 1 4 4 C 1.36543 * 106.70592 * 179.97438 * 3 2 1 5 5 C 1.46658 * 125.98853 * 180.02562 * 4 3 2 6 6 O 1.21688 * 120.00305 * 353.22533 * 5 4 3 7 7 N 1.34774 * 119.99882 * 173.22428 * 5 4 3 8 8 C 1.46503 * 120.00440 * 3.37840 * 7 5 4 9 9 C 1.46506 * 120.00174 * 183.38015 * 7 5 4 10 10 C 1.50706 * 109.46989 * 89.99653 * 9 7 5 11 11 H 1.07998 * 119.99852 * 0.02562 * 10 9 7 12 12 C 1.37874 * 119.99733 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00283 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00044 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47015 * 90.00295 * 14 12 10 16 16 H 1.48497 * 109.47200 * 210.00175 * 14 12 10 17 17 H 1.48505 * 109.47408 * 330.00083 * 14 12 10 18 18 O 1.34919 * 108.02661 * 0.02562 * 4 3 2 19 19 C 1.33935 * 109.38131 * 359.97438 * 18 4 3 20 20 C 1.50697 * 125.61733 * 179.97438 * 19 18 4 21 21 H 1.08994 * 109.47439 * 90.02538 * 1 2 3 22 22 H 1.08999 * 109.47106 * 210.02666 * 1 2 3 23 23 H 1.09000 * 109.47012 * 330.02659 * 1 2 3 24 24 H 1.07994 * 126.65089 * 0.25884 * 3 2 1 25 25 H 1.08999 * 109.46963 * 84.00720 * 8 7 5 26 26 H 1.08999 * 109.47533 * 204.01691 * 8 7 5 27 27 H 1.09004 * 109.46863 * 324.01381 * 8 7 5 28 28 H 1.08996 * 109.47470 * 209.99715 * 9 7 5 29 29 H 1.09003 * 109.46625 * 330.00114 * 9 7 5 30 30 H 0.96996 * 120.00844 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.46687 * 0.03098 * 20 19 18 32 32 H 1.09003 * 109.46903 * 120.01901 * 20 19 18 33 33 H 1.08995 * 109.47686 * 240.02356 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7514 2.7016 -0.1228 7 7 6.0474 0.9159 0.1396 8 6 6.1577 -0.5430 0.2147 9 6 7.2521 1.7463 0.2147 10 6 7.5336 2.0939 1.6539 11 1 6.8807 1.7321 2.4344 12 6 8.6245 2.8738 1.9740 13 7 8.8706 3.1768 3.2298 14 14 9.7541 3.4989 0.6239 15 1 9.2669 4.8162 0.1413 16 1 11.1312 3.6465 1.1595 17 1 9.7622 2.5312 -0.5025 18 8 3.5858 -0.6804 0.0004 19 6 2.3097 -1.0870 0.0002 20 6 1.8455 -2.5207 -0.0006 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 2.0267 2.1625 0.0039 25 1 6.1731 -0.9586 -0.7928 26 1 7.0783 -0.8117 0.7328 27 1 5.3035 -0.9443 0.7602 28 1 8.0981 1.1974 -0.1986 29 1 7.0985 2.6617 -0.3568 30 1 9.6379 3.7257 3.4551 31 1 2.7113 -3.1829 -0.0005 32 1 1.2445 -2.7085 0.8892 33 1 1.2450 -2.7078 -0.8908 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133005585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:35 Heat of formation + Delta-G solvation = -20.486197 kcal Electronic energy + Delta-G solvation = -16706.050856 eV Core-core repulsion = 13926.845545 eV Total energy + Delta-G solvation = -2779.205311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.57041 -38.79060 -35.19825 -34.24095 -32.54805 -31.86723 -28.96690 -28.53872 -26.41240 -25.64239 -22.91353 -21.25144 -20.46073 -18.80698 -17.00049 -16.77140 -16.35832 -15.54946 -15.29919 -14.53432 -13.99781 -13.66580 -13.35144 -13.23221 -12.98722 -12.89590 -12.75169 -12.47991 -12.42598 -12.25840 -11.88637 -11.52899 -11.37362 -10.89039 -10.53301 -10.17340 -9.63539 -9.53085 -9.41320 -8.60228 -8.26471 -7.74223 -6.09761 -4.09545 1.36839 2.43873 2.86808 3.29369 3.35293 3.37111 3.67517 3.86902 4.38804 4.68757 4.85943 4.91121 5.15267 5.22345 5.26796 5.42606 5.50291 5.56803 5.70505 5.79035 5.85890 5.90820 6.03246 6.06645 6.34500 6.58691 6.65789 6.88353 7.08899 7.27773 7.57222 8.11185 8.43253 8.76789 8.93820 9.49409 11.03506 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045278 B = 0.005809 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.247368 B = 4818.857798 C = 5014.197498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.192 4.192 3 C -0.131 4.131 4 C -0.054 4.054 5 C 0.590 3.410 6 O -0.522 6.522 7 N -0.585 5.585 8 C 0.080 3.920 9 C 0.214 3.786 10 C -0.533 4.533 11 H 0.075 0.925 12 C 0.074 3.926 13 N -0.896 5.896 14 Si 0.877 3.123 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.265 1.265 18 O -0.153 6.153 19 C -0.008 4.008 20 C -0.072 4.072 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.156 0.844 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -11.807 -7.766 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.193 4.193 3 C -0.152 4.152 4 C -0.106 4.106 5 C 0.376 3.624 6 O -0.400 6.400 7 N -0.315 5.315 8 C -0.063 4.063 9 C 0.094 3.906 10 C -0.571 4.571 11 H 0.093 0.907 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.704 3.296 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.190 1.190 18 O -0.050 6.050 19 C -0.059 4.059 20 C -0.129 4.129 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.174 0.826 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.120 -11.260 -7.708 18.930 hybrid contribution 0.597 0.470 -0.430 0.873 sum -12.524 -10.790 -8.138 18.426 Atomic orbital electron populations 1.20141 0.89034 1.02510 1.01876 1.20134 0.97163 0.91948 1.10080 1.21748 0.90646 1.00262 1.02532 1.22455 0.96721 0.79891 1.11570 1.16633 0.81155 0.86193 0.78445 1.90837 1.85255 1.12594 1.51325 1.47785 1.07051 1.07340 1.69300 1.21869 1.03341 0.80192 1.00899 1.19785 0.81176 0.90936 0.98677 1.21319 1.11804 1.32823 0.91171 0.90663 1.24846 0.97283 0.95297 0.95464 1.69891 1.28848 1.37694 1.16988 0.86839 0.80211 0.80222 0.82374 1.19781 1.20981 1.19003 1.84297 1.27738 1.22202 1.70761 1.22574 0.81623 0.96944 1.04808 1.20308 1.01742 0.87434 1.03388 0.91605 0.91773 0.91461 0.82590 0.93403 0.90176 0.90953 0.94731 0.94151 0.92477 0.90432 0.89683 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.17 36.01 0.37 -0.37 16 2 C -0.19 -2.56 6.14 -104.93 -0.64 -3.20 16 3 C -0.13 -2.17 10.58 -39.39 -0.42 -2.58 16 4 C -0.05 -1.01 6.77 -36.80 -0.25 -1.26 16 5 C 0.59 13.34 7.64 -12.86 -0.10 13.25 16 6 O -0.52 -13.50 16.43 5.20 0.09 -13.41 16 7 N -0.58 -13.04 2.86 -184.51 -0.53 -13.56 16 8 C 0.08 1.40 9.63 59.85 0.58 1.97 16 9 C 0.21 5.40 4.23 -5.19 -0.02 5.38 16 10 C -0.53 -15.62 9.94 -34.44 -0.34 -15.96 16 11 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 12 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 13 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 14 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 18 O -0.15 -2.45 7.29 4.97 0.04 -2.41 16 19 C -0.01 -0.10 7.31 -35.42 -0.26 -0.36 16 20 C -0.07 -0.58 9.92 36.00 0.36 -0.22 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.16 2.48 8.06 -52.49 -0.42 2.05 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 27 H 0.07 1.19 5.40 -51.93 -0.28 0.91 16 28 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 29 H 0.04 1.07 6.80 -51.93 -0.35 0.72 16 30 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -34.39 285.06 -5.21 -39.61 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.38 Total: -3.13 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.83 Total: -1.29 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.25 Total: -40.64 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.12 Total: -15.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.39 -5.21 -39.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133005585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.122 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds