Wall clock time and date at job start Sun Mar 29 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40365 * 126.43939 * 2 1 4 4 C 1.36543 * 106.70592 * 179.97438 * 3 2 1 5 5 C 1.46658 * 125.98853 * 180.02562 * 4 3 2 6 6 O 1.21688 * 120.00305 * 353.22533 * 5 4 3 7 7 N 1.34774 * 119.99882 * 173.22428 * 5 4 3 8 8 C 1.46503 * 120.00440 * 3.37840 * 7 5 4 9 9 C 1.46506 * 120.00174 * 183.38015 * 7 5 4 10 10 C 1.50706 * 109.46989 * 89.99653 * 9 7 5 11 11 H 1.07998 * 119.99852 * 0.02562 * 10 9 7 12 12 C 1.37874 * 119.99733 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00283 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00044 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47015 * 90.00295 * 14 12 10 16 16 H 1.48497 * 109.47200 * 210.00175 * 14 12 10 17 17 H 1.48505 * 109.47408 * 330.00083 * 14 12 10 18 18 O 1.34919 * 108.02661 * 0.02562 * 4 3 2 19 19 C 1.33935 * 109.38131 * 359.97438 * 18 4 3 20 20 C 1.50697 * 125.61733 * 179.97438 * 19 18 4 21 21 H 1.08994 * 109.47439 * 90.02538 * 1 2 3 22 22 H 1.08999 * 109.47106 * 210.02666 * 1 2 3 23 23 H 1.09000 * 109.47012 * 330.02659 * 1 2 3 24 24 H 1.07994 * 126.65089 * 0.25884 * 3 2 1 25 25 H 1.08999 * 109.46963 * 84.00720 * 8 7 5 26 26 H 1.08999 * 109.47533 * 204.01691 * 8 7 5 27 27 H 1.09004 * 109.46863 * 324.01381 * 8 7 5 28 28 H 1.08996 * 109.47470 * 209.99715 * 9 7 5 29 29 H 1.09003 * 109.46625 * 330.00114 * 9 7 5 30 30 H 0.96996 * 120.00844 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.46687 * 0.03098 * 20 19 18 32 32 H 1.09003 * 109.46903 * 120.01901 * 20 19 18 33 33 H 1.08995 * 109.47686 * 240.02356 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7514 2.7016 -0.1228 7 7 6.0474 0.9159 0.1396 8 6 6.1577 -0.5430 0.2147 9 6 7.2521 1.7463 0.2147 10 6 7.5336 2.0939 1.6539 11 1 6.8807 1.7321 2.4344 12 6 8.6245 2.8738 1.9740 13 7 8.8706 3.1768 3.2298 14 14 9.7541 3.4989 0.6239 15 1 9.2669 4.8162 0.1413 16 1 11.1312 3.6465 1.1595 17 1 9.7622 2.5312 -0.5025 18 8 3.5858 -0.6804 0.0004 19 6 2.3097 -1.0870 0.0002 20 6 1.8455 -2.5207 -0.0006 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 2.0267 2.1625 0.0039 25 1 6.1731 -0.9586 -0.7928 26 1 7.0783 -0.8117 0.7328 27 1 5.3035 -0.9443 0.7602 28 1 8.0981 1.1974 -0.1986 29 1 7.0985 2.6617 -0.3568 30 1 9.6379 3.7257 3.4551 31 1 2.7113 -3.1829 -0.0005 32 1 1.2445 -2.7085 0.8892 33 1 1.2450 -2.7078 -0.8908 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133005585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:34 Heat of formation + Delta-G solvation = -44.157702 kcal Electronic energy + Delta-G solvation = -16707.077330 eV Core-core repulsion = 13926.845545 eV Total energy + Delta-G solvation = -2780.231785 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.76846 -40.52301 -36.93187 -35.39232 -34.69568 -32.97891 -30.77396 -29.54528 -27.76733 -27.10713 -24.64809 -22.64797 -21.80745 -20.23048 -19.20197 -18.25268 -17.64249 -17.33224 -16.61372 -16.31217 -15.70550 -15.01279 -14.56848 -14.46358 -14.21659 -14.08642 -13.98656 -13.74229 -13.63406 -13.55275 -13.23268 -13.03209 -12.76326 -12.45042 -12.34442 -12.08484 -11.78689 -11.26122 -10.86181 -10.72461 -9.67212 -9.26814 -8.37232 -6.44407 0.03953 1.30731 1.32571 1.37227 1.45795 1.61055 2.07971 2.28951 2.30381 2.96657 3.50836 3.81889 3.87956 4.24249 4.36172 4.48313 4.53878 4.64093 4.69633 4.74898 4.80112 4.87266 4.91362 4.93506 5.06624 5.10927 5.18853 5.37828 5.44848 5.62281 5.92315 6.17851 6.43858 6.56409 7.02261 7.21568 8.79863 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045278 B = 0.005809 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.247368 B = 4818.857798 C = 5014.197498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.203 4.203 3 C -0.127 4.127 4 C -0.097 4.097 5 C 0.582 3.418 6 O -0.574 6.574 7 N -0.595 5.595 8 C 0.079 3.921 9 C 0.222 3.778 10 C -0.545 4.545 11 H 0.026 0.974 12 C 0.014 3.986 13 N -0.944 5.944 14 Si 0.951 3.049 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.236 1.236 18 O -0.158 6.158 19 C 0.010 3.990 20 C -0.073 4.073 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.152 0.848 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.271 0.729 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -14.101 -9.521 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.204 4.204 3 C -0.148 4.148 4 C -0.149 4.149 5 C 0.371 3.629 6 O -0.456 6.456 7 N -0.324 5.324 8 C -0.062 4.062 9 C 0.101 3.899 10 C -0.583 4.583 11 H 0.044 0.956 12 C -0.185 4.185 13 N -0.583 5.583 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.159 1.159 18 O -0.055 6.055 19 C -0.042 4.042 20 C -0.129 4.129 21 H 0.099 0.901 22 H 0.109 0.891 23 H 0.085 0.915 24 H 0.169 0.831 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.174 -13.614 -9.465 21.814 hybrid contribution 0.737 1.063 0.202 1.309 sum -13.438 -12.550 -9.264 20.589 Atomic orbital electron populations 1.20260 0.85937 1.03838 1.03266 1.20567 0.99173 0.90554 1.10090 1.22029 0.90764 1.01315 1.00715 1.21663 0.95482 0.81131 1.16612 1.17128 0.82279 0.86200 0.77310 1.90775 1.86296 1.14807 1.53729 1.47883 1.06288 1.09069 1.69187 1.22079 1.03758 0.77434 1.02947 1.19512 0.83292 0.91471 0.95641 1.21502 1.11270 1.33189 0.92331 0.95601 1.25870 0.99112 0.95180 0.98301 1.70041 1.29949 1.38699 1.19623 0.85668 0.77748 0.79779 0.79492 1.19929 1.19673 1.15931 1.84242 1.29614 1.20587 1.71073 1.23685 0.80240 0.99255 1.00984 1.20646 1.02737 0.83791 1.05729 0.90090 0.89150 0.91503 0.83067 0.90331 0.90140 0.90124 0.92223 0.95560 0.92035 0.89476 0.87340 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.17 71.24 0.72 -0.45 16 2 C -0.20 -4.95 6.14 -20.06 -0.12 -5.07 16 3 C -0.13 -4.22 10.58 22.39 0.24 -3.98 16 4 C -0.10 -3.70 6.77 24.07 0.16 -3.53 16 5 C 0.58 27.41 7.64 86.44 0.66 28.07 16 6 O -0.57 -31.38 16.43 -4.31 -0.07 -31.45 16 7 N -0.60 -27.07 2.86 -855.89 -2.45 -29.52 16 8 C 0.08 2.71 9.63 127.77 1.23 3.94 16 9 C 0.22 11.35 4.23 85.63 0.36 11.72 16 10 C -0.54 -33.17 9.94 25.60 0.25 -32.92 16 11 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 12 C 0.01 0.83 5.47 84.65 0.46 1.29 16 13 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 14 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 15 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 18 O -0.16 -4.85 7.29 -5.13 -0.04 -4.88 16 19 C 0.01 0.24 7.31 24.97 0.18 0.42 16 20 C -0.07 -0.82 9.92 71.23 0.71 -0.11 16 21 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.09 0.93 7.88 -2.39 -0.02 0.91 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.15 5.00 8.06 -2.91 -0.02 4.97 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 27 H 0.08 2.61 5.40 -2.38 -0.01 2.60 16 28 H 0.06 2.73 7.13 -2.39 -0.02 2.72 16 29 H 0.03 1.42 6.80 -2.39 -0.02 1.40 16 30 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.65 285.06 5.54 -74.11 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.05 Total: 5.89 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.86 Total: -0.63 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.15 Total: -89.72 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.11 Total: -36.33 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -79.65 5.54 -74.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133005585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.954 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds