Wall clock time and date at job start Sun Mar 29 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.43921 * 2 1 4 4 C 1.36542 * 106.70514 * 179.97438 * 3 2 1 5 5 C 1.46665 * 125.98822 * 180.02562 * 4 3 2 6 6 O 1.21685 * 119.99795 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99694 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47139 * 35.00471 * 8 7 5 10 10 C 1.52999 * 109.47049 * 275.00022 * 8 7 5 11 11 C 1.50702 * 109.46648 * 154.99998 * 8 7 5 12 12 H 1.07996 * 120.00470 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99605 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00301 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99703 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47149 * 60.00672 * 15 13 11 17 17 H 1.48504 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47308 * 300.00384 * 15 13 11 19 19 O 1.34918 * 108.02911 * 0.02562 * 4 3 2 20 20 C 1.33929 * 109.37643 * 359.76607 * 19 4 3 21 21 C 1.50711 * 125.61315 * 180.26836 * 20 19 4 22 22 H 1.09002 * 109.47152 * 90.02384 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02484 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02465 * 1 2 3 25 25 H 1.07995 * 126.64949 * 359.97438 * 3 2 1 26 26 H 0.97000 * 119.99765 * 0.02562 * 7 5 4 27 27 H 1.08996 * 109.47328 * 60.00541 * 10 8 7 28 28 H 1.09003 * 109.46535 * 180.02562 * 10 8 7 29 29 H 1.08999 * 109.47151 * 299.99914 * 10 8 7 30 30 H 0.96998 * 119.99921 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.46686 * 270.12730 * 21 20 19 32 32 H 1.08996 * 109.46841 * 30.12744 * 21 20 19 33 33 H 1.08994 * 109.46767 * 150.12916 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7471 2.7076 0.0019 7 7 6.0522 0.9092 0.0024 8 6 7.2626 1.7344 0.0026 9 1 7.0884 2.6349 0.5914 10 6 7.6140 2.1246 -1.4345 11 6 8.4026 0.9536 0.6042 12 1 8.2417 -0.0564 0.9512 13 6 9.6514 1.5283 0.7105 14 7 9.8476 2.7579 0.2875 15 14 11.0643 0.5607 1.4569 16 1 11.3015 -0.6668 0.6556 17 1 12.2914 1.3971 1.4570 18 1 10.7231 0.1830 2.8519 19 8 3.5858 -0.6804 0.0004 20 6 2.3097 -1.0870 0.0048 21 6 1.8455 -2.5208 0.0118 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5142 25 1 2.0266 2.1624 -0.0004 26 1 6.1245 -0.0581 0.0023 27 1 6.7896 2.6893 -1.8696 28 1 8.5150 2.7382 -1.4343 29 1 7.7883 1.2240 -2.0233 30 1 10.7261 3.1623 0.3627 31 1 1.7336 -2.8714 -1.0142 32 1 2.5803 -3.1380 0.5286 33 1 0.8869 -2.5897 0.5260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136152470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:46 Heat of formation + Delta-G solvation = -39.223262 kcal Electronic energy + Delta-G solvation = -16433.457824 eV Core-core repulsion = 13653.440012 eV Total energy + Delta-G solvation = -2780.017811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.53567 -38.66545 -34.94113 -34.35182 -32.39580 -31.87230 -29.22143 -28.56261 -26.07090 -25.25002 -22.51058 -21.00788 -20.29292 -19.12169 -17.80887 -16.33368 -16.12079 -15.33057 -15.16649 -14.40260 -14.00772 -13.77037 -13.37601 -13.18994 -13.00608 -12.78568 -12.65132 -12.41168 -12.26334 -11.74080 -11.54445 -11.11124 -10.96720 -10.78194 -10.36380 -10.23897 -9.55268 -9.44340 -9.07899 -8.57403 -8.30851 -7.92587 -6.12818 -4.22280 1.36459 2.43005 2.87583 3.26571 3.31410 3.33040 3.80508 4.01137 4.36906 4.72307 4.84187 5.08148 5.14236 5.19690 5.26886 5.50190 5.53814 5.59505 5.76168 5.87067 6.01988 6.16648 6.57054 6.80250 6.93734 7.05775 7.12071 7.36032 7.54416 7.68375 7.88884 8.11908 8.58009 8.72628 8.98350 9.44572 10.93287 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040351 B = 0.005393 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.749240 B = 5190.989547 C = 5674.702036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.194 4.194 3 C -0.134 4.134 4 C -0.056 4.056 5 C 0.585 3.415 6 O -0.534 6.534 7 N -0.693 5.693 8 C 0.262 3.738 9 H 0.052 0.948 10 C -0.148 4.148 11 C -0.535 4.535 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 O -0.160 6.160 20 C 0.000 4.000 21 C -0.074 4.074 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.157 0.843 26 H 0.394 0.606 27 H 0.016 0.984 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 -9.078 -1.078 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.195 4.195 3 C -0.154 4.154 4 C -0.109 4.109 5 C 0.369 3.631 6 O -0.414 6.414 7 N -0.340 5.340 8 C 0.161 3.839 9 H 0.070 0.930 10 C -0.206 4.206 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.521 5.521 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 O -0.056 6.056 20 C -0.053 4.053 21 C -0.130 4.130 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.174 0.826 26 H 0.227 0.773 27 H 0.035 0.965 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.669 -8.238 -1.092 16.860 hybrid contribution 0.749 -0.807 0.358 1.158 sum -13.920 -9.045 -0.734 16.617 Atomic orbital electron populations 1.20156 0.88985 1.02453 1.01953 1.20146 0.97190 0.91968 1.10195 1.21746 0.90695 1.00213 1.02784 1.22627 0.97025 0.79845 1.11375 1.16675 0.81590 0.86417 0.78458 1.90830 1.85886 1.12207 1.52492 1.46541 1.06144 1.10913 1.70364 1.18867 0.79365 0.91342 0.94320 0.92999 1.22090 1.01578 0.99862 0.97114 1.21162 0.93952 1.00633 1.41620 0.92015 1.24881 0.98619 0.95015 0.95105 1.69888 1.23430 1.13033 1.45719 0.86473 0.81041 0.79696 0.79685 1.20126 1.21082 1.20146 1.84031 1.28501 1.22278 1.70766 1.22473 0.81015 0.96976 1.04796 1.20334 1.01705 0.87412 1.03552 0.91541 0.91480 0.91760 0.82570 0.77287 0.96501 0.88895 0.95309 0.92453 0.89948 0.90321 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.17 36.01 0.37 -0.36 16 2 C -0.19 -2.57 6.14 -104.93 -0.64 -3.21 16 3 C -0.13 -2.16 10.57 -39.39 -0.42 -2.58 16 4 C -0.06 -1.04 7.13 -36.79 -0.26 -1.30 16 5 C 0.58 12.92 7.75 -12.86 -0.10 12.82 16 6 O -0.53 -13.42 16.53 5.20 0.09 -13.33 16 7 N -0.69 -15.61 5.06 -56.25 -0.28 -15.90 16 8 C 0.26 6.88 2.56 -69.08 -0.18 6.70 16 9 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 10 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 11 C -0.54 -14.47 8.73 -34.44 -0.30 -14.77 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 14 N -0.88 -25.01 11.32 55.43 0.63 -24.39 16 15 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 O -0.16 -2.64 10.40 4.99 0.05 -2.58 16 20 C 0.00 -0.01 7.31 -35.41 -0.26 -0.26 16 21 C -0.07 -0.61 10.21 36.01 0.37 -0.25 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.47 7.13 -51.93 -0.37 0.10 16 25 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 26 H 0.39 7.99 8.30 -40.82 -0.34 7.65 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.55 7.12 -51.93 -0.37 0.18 16 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -31.05 288.44 -5.66 -36.71 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.29 Total: 4.25 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.18 Total: -4.89 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.34 Total: -40.28 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.14 Total: -15.91 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.05 -5.66 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136152470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.515 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds