Wall clock time and date at job start Sun Mar 29 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.43921 * 2 1 4 4 C 1.36542 * 106.70514 * 179.97438 * 3 2 1 5 5 C 1.46665 * 125.98822 * 180.02562 * 4 3 2 6 6 O 1.21685 * 119.99795 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99694 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47139 * 35.00471 * 8 7 5 10 10 C 1.52999 * 109.47049 * 275.00022 * 8 7 5 11 11 C 1.50702 * 109.46648 * 154.99998 * 8 7 5 12 12 H 1.07996 * 120.00470 * 0.02562 * 11 8 7 13 13 C 1.37882 * 119.99605 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00301 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99703 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47149 * 60.00672 * 15 13 11 17 17 H 1.48504 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47308 * 300.00384 * 15 13 11 19 19 O 1.34918 * 108.02911 * 0.02562 * 4 3 2 20 20 C 1.33929 * 109.37643 * 359.76607 * 19 4 3 21 21 C 1.50711 * 125.61315 * 180.26836 * 20 19 4 22 22 H 1.09002 * 109.47152 * 90.02384 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02484 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02465 * 1 2 3 25 25 H 1.07995 * 126.64949 * 359.97438 * 3 2 1 26 26 H 0.97000 * 119.99765 * 0.02562 * 7 5 4 27 27 H 1.08996 * 109.47328 * 60.00541 * 10 8 7 28 28 H 1.09003 * 109.46535 * 180.02562 * 10 8 7 29 29 H 1.08999 * 109.47151 * 299.99914 * 10 8 7 30 30 H 0.96998 * 119.99921 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.46686 * 270.12730 * 21 20 19 32 32 H 1.08996 * 109.46841 * 30.12744 * 21 20 19 33 33 H 1.08994 * 109.46767 * 150.12916 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7471 2.7076 0.0019 7 7 6.0522 0.9092 0.0024 8 6 7.2626 1.7344 0.0026 9 1 7.0884 2.6349 0.5914 10 6 7.6140 2.1246 -1.4345 11 6 8.4026 0.9536 0.6042 12 1 8.2417 -0.0564 0.9512 13 6 9.6514 1.5283 0.7105 14 7 9.8476 2.7579 0.2875 15 14 11.0643 0.5607 1.4569 16 1 11.3015 -0.6668 0.6556 17 1 12.2914 1.3971 1.4570 18 1 10.7231 0.1830 2.8519 19 8 3.5858 -0.6804 0.0004 20 6 2.3097 -1.0870 0.0048 21 6 1.8455 -2.5208 0.0118 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5142 25 1 2.0266 2.1624 -0.0004 26 1 6.1245 -0.0581 0.0023 27 1 6.7896 2.6893 -1.8696 28 1 8.5150 2.7382 -1.4343 29 1 7.7883 1.2240 -2.0233 30 1 10.7261 3.1623 0.3627 31 1 1.7336 -2.8714 -1.0142 32 1 2.5803 -3.1380 0.5286 33 1 0.8869 -2.5897 0.5260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136152470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:46 Heat of formation + Delta-G solvation = -59.984305 kcal Electronic energy + Delta-G solvation = -16434.358090 eV Core-core repulsion = 13653.440012 eV Total energy + Delta-G solvation = -2780.918078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.74015 -40.46584 -36.88247 -35.45093 -34.36772 -32.99878 -31.07359 -29.50133 -27.44464 -27.16756 -24.00727 -22.40877 -21.97932 -20.69427 -19.32644 -17.96360 -17.56721 -17.23869 -16.59351 -16.08822 -15.70854 -15.05719 -14.63576 -14.43664 -14.13896 -14.01527 -13.78688 -13.61512 -13.59428 -13.06725 -12.94087 -12.90967 -12.78471 -12.42897 -12.32140 -12.18433 -11.27783 -11.17501 -10.73242 -10.63665 -9.99416 -9.32659 -8.20642 -6.39003 0.02883 1.30455 1.44072 1.46750 1.54617 1.64671 2.16146 2.31820 2.53343 3.09605 3.66432 3.81443 3.93564 4.32001 4.48888 4.66456 4.69978 4.72990 4.80341 4.86230 4.91790 5.01104 5.08755 5.09930 5.13536 5.32546 5.48036 5.58250 5.61653 5.76951 5.97839 6.02065 6.64438 6.76181 7.16533 7.35334 8.85873 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040351 B = 0.005393 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.749240 B = 5190.989547 C = 5674.702036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.202 4.202 3 C -0.124 4.124 4 C -0.101 4.101 5 C 0.585 3.415 6 O -0.577 6.577 7 N -0.692 5.692 8 C 0.268 3.732 9 H 0.006 0.994 10 C -0.134 4.134 11 C -0.553 4.553 12 H 0.071 0.929 13 C 0.017 3.983 14 N -0.915 5.915 15 Si 0.976 3.024 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.271 1.271 19 O -0.172 6.172 20 C 0.013 3.987 21 C -0.075 4.075 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.157 0.843 26 H 0.405 0.595 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 -11.892 -0.856 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.203 4.203 3 C -0.144 4.144 4 C -0.152 4.152 5 C 0.372 3.628 6 O -0.460 6.460 7 N -0.339 5.339 8 C 0.165 3.835 9 H 0.024 0.976 10 C -0.193 4.193 11 C -0.590 4.590 12 H 0.089 0.911 13 C -0.183 4.183 14 N -0.553 5.553 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.196 1.196 19 O -0.069 6.069 20 C -0.039 4.039 21 C -0.131 4.131 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.175 0.825 26 H 0.240 0.760 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.202 -11.084 -0.874 19.650 hybrid contribution 1.059 0.018 0.282 1.096 sum -15.143 -11.067 -0.592 18.765 Atomic orbital electron populations 1.20288 0.85723 1.04017 1.03296 1.20601 0.99268 0.90507 1.09906 1.22051 0.90534 1.01401 1.00461 1.21813 0.95857 0.80906 1.16655 1.17043 0.82375 0.86392 0.77015 1.90783 1.86764 1.14178 1.54318 1.46287 1.05572 1.11096 1.70963 1.18524 0.80822 0.90295 0.93856 0.97643 1.21912 1.00462 0.99909 0.97014 1.21454 0.94417 1.01107 1.42070 0.91087 1.25808 1.01316 0.95925 0.95287 1.70032 1.24143 1.14630 1.46506 0.85335 0.77335 0.78404 0.78889 1.18847 1.20800 1.19617 1.84003 1.30566 1.21017 1.71265 1.23598 0.79646 0.99346 1.01281 1.20667 1.03072 0.83931 1.05385 0.90203 0.91152 0.89052 0.82532 0.75978 0.96716 0.90848 0.94059 0.92307 0.87877 0.89615 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.17 71.24 0.72 -0.39 16 2 C -0.20 -4.84 6.14 -20.06 -0.12 -4.96 16 3 C -0.12 -3.95 10.57 22.39 0.24 -3.72 16 4 C -0.10 -3.77 7.13 24.08 0.17 -3.60 16 5 C 0.58 27.01 7.75 86.44 0.67 27.68 16 6 O -0.58 -30.70 16.53 -4.30 -0.07 -30.77 16 7 N -0.69 -32.31 5.06 -450.09 -2.28 -34.59 16 8 C 0.27 14.63 2.56 44.25 0.11 14.74 16 9 H 0.01 0.36 7.58 -2.39 -0.02 0.34 16 10 C -0.13 -7.08 9.26 71.98 0.67 -6.41 16 11 C -0.55 -30.31 8.73 25.60 0.22 -30.09 16 12 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 13 C 0.02 0.94 5.30 84.66 0.45 1.38 16 14 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 15 Si 0.98 42.53 29.54 68.60 2.03 44.56 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 O -0.17 -5.51 10.40 -5.07 -0.05 -5.57 16 20 C 0.01 0.32 7.31 24.97 0.18 0.50 16 21 C -0.07 -0.91 10.21 71.24 0.73 -0.19 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 0.85 7.13 -2.38 -0.02 0.83 16 25 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 26 H 0.41 16.78 8.30 -92.71 -0.77 16.01 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 4.15 6.07 -2.39 -0.01 4.14 16 29 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.12 0.80 7.12 -2.39 -0.02 0.78 16 Total: -1.00 -69.95 288.44 4.26 -65.69 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.35 Total: 18.52 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 4.04 Total: -5.05 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -2.04 Total: -87.37 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.12 Total: -36.34 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -69.95 4.26 -65.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136152470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.702 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds