Wall clock time and date at job start Sun Mar 29 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.40005 * 120.00349 * 2 1 4 4 C 1.38640 * 120.09679 * 0.02562 * 3 2 1 5 5 C 1.38292 * 120.00731 * 179.74613 * 4 3 2 6 6 C 1.38266 * 120.19923 * 0.27026 * 5 4 3 7 7 C 1.38248 * 120.19922 * 359.95815 * 6 5 4 8 8 C 1.38729 * 119.99548 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.10227 * 179.97438 * 8 7 6 10 10 C 1.81399 * 102.99977 * 6.23509 * 9 8 7 11 11 H 1.09001 * 109.47288 * 309.42504 * 10 9 8 12 12 C 1.53000 * 109.47067 * 69.42704 * 10 9 8 13 13 C 1.50704 * 109.47104 * 189.42414 * 10 9 8 14 14 H 1.08002 * 119.99637 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00304 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99407 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00245 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46869 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.46995 * 119.99961 * 17 15 13 20 20 H 1.48500 * 109.46760 * 239.99841 * 17 15 13 21 21 H 1.09001 * 109.46891 * 300.00201 * 1 2 3 22 22 H 1.08999 * 109.47122 * 59.99655 * 1 2 3 23 23 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99905 * 180.02562 * 2 1 3 25 25 H 1.08005 * 119.99779 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.90086 * 180.25590 * 5 4 3 27 27 H 1.08000 * 119.90151 * 179.97438 * 6 5 4 28 28 H 1.08005 * 120.00161 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46998 * 67.43936 * 12 10 9 30 30 H 1.08999 * 109.47155 * 187.43855 * 12 10 9 31 31 H 1.08998 * 109.47128 * 307.43629 * 12 10 9 32 32 H 0.97005 * 119.99725 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1651 1.2124 0.0000 4 6 1.4740 2.4143 0.0005 5 6 2.1674 3.6108 0.0058 6 6 3.5500 3.6134 0.0050 7 6 4.2476 2.4199 -0.0003 8 6 3.5603 1.2148 -0.0053 9 16 4.4466 -0.3080 -0.0127 10 6 6.1706 0.2222 0.1805 11 1 6.3962 0.9983 -0.5508 12 6 6.3788 0.7753 1.5918 13 6 7.0857 -0.9551 -0.0377 14 1 6.6716 -1.9251 -0.2699 15 6 8.4517 -0.7936 0.0580 16 7 8.9558 0.3879 0.3403 17 14 9.5860 -2.2527 -0.2132 18 1 8.7758 -3.4603 -0.5141 19 1 10.4940 -1.9685 -1.3533 20 1 10.3899 -2.4892 1.0128 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9499 -0.8400 -0.0004 25 1 0.3939 2.4162 0.0014 26 1 1.6272 4.5461 0.0104 27 1 4.0867 4.5506 0.0087 28 1 5.3277 2.4256 -0.0005 29 1 6.2825 -0.0330 2.3167 30 1 7.3738 1.2140 1.6669 31 1 5.6287 1.5389 1.7971 32 1 9.9169 0.5016 0.4072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157836195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:05 Heat of formation + Delta-G solvation = 18.054367 kcal Electronic energy + Delta-G solvation = -14347.559474 eV Core-core repulsion = 12012.778278 eV Total energy + Delta-G solvation = -2334.781196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.86929 -35.22243 -34.05520 -31.01470 -30.00634 -29.22847 -25.65222 -25.27945 -22.36315 -21.55380 -20.83868 -17.71477 -16.33381 -16.12902 -15.69945 -14.85902 -14.20247 -14.13418 -13.72207 -13.47187 -13.34997 -12.64653 -12.40777 -11.99192 -11.85791 -11.59494 -11.10725 -11.01854 -10.91147 -10.52053 -10.39169 -9.93680 -9.83887 -9.36457 -8.98845 -8.84698 -8.48619 -7.43248 -6.28182 -6.19488 -4.27772 1.78909 2.02632 2.63071 3.22277 3.30134 3.35664 3.64073 3.91062 4.26531 4.31912 5.12999 5.21200 5.28583 5.44648 5.50898 5.67089 5.73494 5.93408 6.09909 6.35621 6.57755 6.63872 6.77585 6.79719 6.83379 7.02926 7.22658 7.38373 7.63141 7.65245 7.79788 7.99535 8.03237 8.71246 9.36006 10.86985 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.006700 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.461673 B = 4178.283968 C = 4770.458904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.751 5.751 3 C 0.219 3.781 4 C -0.190 4.190 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.088 4.088 8 C -0.133 4.133 9 S -0.185 6.185 10 C 0.101 3.899 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.510 4.510 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.887 5.887 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.405 0.595 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.020 0.980 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 3.048 0.037 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.383 5.383 3 C 0.112 3.888 4 C -0.215 4.215 5 C -0.117 4.117 6 C -0.183 4.183 7 C -0.113 4.113 8 C -0.249 4.249 9 S 0.060 5.940 10 C -0.026 4.026 11 H 0.068 0.932 12 C -0.198 4.198 13 C -0.549 4.549 14 H 0.085 0.915 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.241 0.759 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.863 1.924 -0.046 13.006 hybrid contribution 1.261 0.328 0.008 1.303 sum -11.602 2.252 -0.038 11.818 Atomic orbital electron populations 1.21440 0.80837 1.01860 1.00552 1.44540 1.05039 1.05723 1.83005 1.17353 0.89182 0.86477 0.95826 1.20418 0.98820 0.91016 1.11211 1.20755 0.94133 0.96773 0.99996 1.20800 0.94058 0.97356 1.06044 1.21247 1.00429 0.91121 0.98520 1.21445 0.94176 0.98646 1.10674 1.84875 1.09612 1.08736 1.90729 1.21040 0.84535 0.99604 0.97412 0.93213 1.22084 1.02067 0.98928 0.96708 1.20682 0.90171 0.94521 1.49539 0.91515 1.24894 0.97673 0.96365 0.94466 1.69899 1.12689 1.22099 1.47730 0.86306 0.80330 0.82176 0.77912 1.19518 1.20733 1.20742 0.93408 0.93410 0.91235 0.75929 0.86578 0.86787 0.86707 0.84954 0.94051 0.89315 0.96113 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 9.95 59.84 0.60 1.66 16 2 N -0.75 -11.42 5.84 -65.21 -0.38 -11.80 16 3 C 0.22 3.84 6.66 -83.50 -0.56 3.28 16 4 C -0.19 -2.91 9.31 -39.41 -0.37 -3.28 16 5 C -0.09 -1.41 10.04 -39.55 -0.40 -1.80 16 6 C -0.16 -2.66 10.04 -39.57 -0.40 -3.05 16 7 C -0.09 -1.72 8.01 -39.40 -0.32 -2.03 16 8 C -0.13 -2.66 5.96 -38.92 -0.23 -2.89 16 9 S -0.19 -4.08 19.75 -107.50 -2.12 -6.20 16 10 C 0.10 2.55 1.98 -27.88 -0.06 2.49 16 11 H 0.05 1.33 6.87 -51.92 -0.36 0.98 16 12 C -0.14 -3.33 8.34 37.16 0.31 -3.02 16 13 C -0.51 -13.86 8.57 -34.44 -0.30 -14.15 16 14 H 0.07 1.83 7.71 -52.49 -0.40 1.43 16 15 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 16 N -0.89 -24.43 11.41 55.43 0.63 -23.80 16 17 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H 0.05 0.49 7.95 -51.93 -0.41 0.07 16 22 H 0.05 0.48 7.95 -51.93 -0.41 0.07 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.40 6.39 7.38 -40.82 -0.30 6.08 16 25 H 0.12 1.47 6.74 -52.48 -0.35 1.12 16 26 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.13 2.77 5.00 -52.48 -0.26 2.50 16 29 H 0.04 1.00 8.13 -51.93 -0.42 0.57 16 30 H 0.09 2.28 6.31 -51.93 -0.33 1.96 16 31 H 0.02 0.45 6.08 -51.93 -0.32 0.13 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 274.73 15.07 4.14 4.14 Total: -1.00 -28.34 274.73 -8.53 -36.87 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.97 Total: 5.95 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -1.80 Total: -21.01 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.25 Total: -35.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.12 Total: -6.20 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.34 -8.53 -36.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157836195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.929 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds