Wall clock time and date at job start Sun Mar 29 2020 21:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.40005 * 120.00349 * 2 1 4 4 C 1.38640 * 120.09679 * 0.02562 * 3 2 1 5 5 C 1.38292 * 120.00731 * 179.74613 * 4 3 2 6 6 C 1.38266 * 120.19923 * 0.27026 * 5 4 3 7 7 C 1.38248 * 120.19922 * 359.95815 * 6 5 4 8 8 C 1.38729 * 119.99548 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.10227 * 179.97438 * 8 7 6 10 10 C 1.81399 * 102.99977 * 6.23509 * 9 8 7 11 11 H 1.09001 * 109.47288 * 309.42504 * 10 9 8 12 12 C 1.53000 * 109.47067 * 69.42704 * 10 9 8 13 13 C 1.50704 * 109.47104 * 189.42414 * 10 9 8 14 14 H 1.08002 * 119.99637 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00304 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99407 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00245 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46869 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.46995 * 119.99961 * 17 15 13 20 20 H 1.48500 * 109.46760 * 239.99841 * 17 15 13 21 21 H 1.09001 * 109.46891 * 300.00201 * 1 2 3 22 22 H 1.08999 * 109.47122 * 59.99655 * 1 2 3 23 23 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99905 * 180.02562 * 2 1 3 25 25 H 1.08005 * 119.99779 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.90086 * 180.25590 * 5 4 3 27 27 H 1.08000 * 119.90151 * 179.97438 * 6 5 4 28 28 H 1.08005 * 120.00161 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.46998 * 67.43936 * 12 10 9 30 30 H 1.08999 * 109.47155 * 187.43855 * 12 10 9 31 31 H 1.08998 * 109.47128 * 307.43629 * 12 10 9 32 32 H 0.97005 * 119.99725 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1651 1.2124 0.0000 4 6 1.4740 2.4143 0.0005 5 6 2.1674 3.6108 0.0058 6 6 3.5500 3.6134 0.0050 7 6 4.2476 2.4199 -0.0003 8 6 3.5603 1.2148 -0.0053 9 16 4.4466 -0.3080 -0.0127 10 6 6.1706 0.2222 0.1805 11 1 6.3962 0.9983 -0.5508 12 6 6.3788 0.7753 1.5918 13 6 7.0857 -0.9551 -0.0377 14 1 6.6716 -1.9251 -0.2699 15 6 8.4517 -0.7936 0.0580 16 7 8.9558 0.3879 0.3403 17 14 9.5860 -2.2527 -0.2132 18 1 8.7758 -3.4603 -0.5141 19 1 10.4940 -1.9685 -1.3533 20 1 10.3899 -2.4892 1.0128 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9499 -0.8400 -0.0004 25 1 0.3939 2.4162 0.0014 26 1 1.6272 4.5461 0.0104 27 1 4.0867 4.5506 0.0087 28 1 5.3277 2.4256 -0.0005 29 1 6.2825 -0.0330 2.3167 30 1 7.3738 1.2140 1.6669 31 1 5.6287 1.5389 1.7971 32 1 9.9169 0.5016 0.4072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157836195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:05 Heat of formation + Delta-G solvation = 2.136132 kcal Electronic energy + Delta-G solvation = -14348.249740 eV Core-core repulsion = 12012.778278 eV Total energy + Delta-G solvation = -2335.471463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15201 -36.53665 -35.93774 -32.76225 -31.58300 -30.45623 -27.40662 -26.64483 -23.70176 -23.39658 -22.24041 -19.22261 -18.08672 -17.53657 -17.22652 -16.56789 -15.72125 -15.26250 -15.18842 -14.94717 -14.67963 -14.37395 -13.80701 -13.65699 -13.17780 -12.92906 -12.90749 -12.80251 -12.47143 -12.38878 -12.16202 -11.57453 -11.33000 -11.01580 -10.78478 -10.52641 -10.36932 -8.77689 -8.25430 -7.82105 -6.41573 0.44666 0.71786 0.99535 1.39689 1.41308 1.54284 1.95641 2.37428 2.68650 2.94991 3.04488 4.00931 4.26057 4.40256 4.52877 4.59031 4.62359 4.71669 4.81911 4.82330 4.84430 4.92845 5.04891 5.30521 5.32947 5.50667 5.56981 5.71162 5.74267 5.98429 6.00204 6.47849 6.61077 6.75027 7.25748 8.81278 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.006700 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.461673 B = 4178.283968 C = 4770.458904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.756 5.756 3 C 0.214 3.786 4 C -0.187 4.187 5 C -0.078 4.078 6 C -0.170 4.170 7 C -0.108 4.108 8 C -0.167 4.167 9 S -0.192 6.192 10 C 0.101 3.899 11 H 0.021 0.979 12 C -0.120 4.120 13 C -0.533 4.533 14 H 0.058 0.942 15 C 0.025 3.975 16 N -0.911 5.911 17 Si 0.970 3.030 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.274 1.274 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.398 0.602 25 H 0.151 0.849 26 H 0.157 0.843 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.642 3.550 0.022 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.386 5.386 3 C 0.106 3.894 4 C -0.211 4.211 5 C -0.099 4.099 6 C -0.191 4.191 7 C -0.132 4.132 8 C -0.284 4.284 9 S 0.053 5.947 10 C -0.027 4.027 11 H 0.039 0.961 12 C -0.179 4.179 13 C -0.572 4.572 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.109 0.891 24 H 0.233 0.767 25 H 0.168 0.832 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.058 2.441 -0.060 15.255 hybrid contribution 1.763 0.272 -0.005 1.784 sum -13.295 2.713 -0.064 13.569 Atomic orbital electron populations 1.21719 0.78055 1.03797 1.01579 1.44796 1.06836 1.04718 1.82239 1.17616 0.88314 0.88284 0.95233 1.20854 1.00523 0.90084 1.09682 1.21249 0.93363 0.98450 0.96823 1.21066 0.95268 0.96871 1.05901 1.21175 0.99387 0.92538 1.00130 1.21449 0.95320 0.97203 1.14385 1.84558 1.07450 1.10912 1.91816 1.20761 0.86922 0.98256 0.96797 0.96130 1.21862 1.01233 0.98685 0.96163 1.20938 0.91247 0.94774 1.50266 0.92381 1.25717 0.98986 0.99006 0.93926 1.70007 1.13160 1.23765 1.47945 0.85316 0.78255 0.78877 0.78107 1.19293 1.20035 1.19914 0.92214 0.92211 0.89129 0.76745 0.83161 0.82567 0.84718 0.87736 0.94797 0.91349 0.94781 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.68 9.95 127.77 1.27 2.96 16 2 N -0.76 -21.62 5.84 -360.23 -2.10 -23.72 16 3 C 0.21 7.16 6.66 38.24 0.25 7.41 16 4 C -0.19 -5.04 9.31 22.38 0.21 -4.83 16 5 C -0.08 -2.01 10.04 22.29 0.22 -1.78 16 6 C -0.17 -5.31 10.04 22.28 0.22 -5.08 16 7 C -0.11 -4.27 8.01 22.39 0.18 -4.09 16 8 C -0.17 -6.74 5.96 22.70 0.14 -6.61 16 9 S -0.19 -8.73 19.75 -56.49 -1.12 -9.84 16 10 C 0.10 5.30 1.98 29.85 0.06 5.36 16 11 H 0.02 1.19 6.87 -2.39 -0.02 1.17 16 12 C -0.12 -6.04 8.34 71.98 0.60 -5.44 16 13 C -0.53 -30.05 8.57 25.60 0.22 -29.83 16 14 H 0.06 3.29 7.71 -2.91 -0.02 3.27 16 15 C 0.03 1.39 5.30 84.65 0.45 1.84 16 16 N -0.91 -51.61 11.41 21.45 0.24 -51.36 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 22 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.40 12.27 7.38 -92.71 -0.68 11.59 16 25 H 0.15 3.01 6.74 -2.91 -0.02 2.99 16 26 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.10 4.65 5.00 -2.91 -0.01 4.63 16 29 H 0.03 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.07 3.69 6.31 -2.39 -0.02 3.68 16 31 H 0.03 1.57 6.08 -2.39 -0.01 1.55 16 32 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -62.91 274.73 3.32 -59.59 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.44 Total: 20.07 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 3.82 Total: -40.10 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.86 Total: -75.08 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.12 Total: -9.84 kcal Total: -62.91 3.32 -59.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157836195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.728 kcal (2) G-P(sol) polarization free energy of solvation -62.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds