Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.50696 * 109.47298 * 239.99625 * 2 1 3 5 5 O 1.21288 * 120.00279 * 240.00513 * 4 2 1 6 6 N 1.34777 * 119.99735 * 59.99683 * 4 2 1 7 7 C 1.37105 * 119.99904 * 179.97438 * 6 4 2 8 8 H 1.07991 * 119.99780 * 0.02562 * 7 6 4 9 9 C 1.38954 * 119.99815 * 179.72596 * 7 6 4 10 10 N 1.31412 * 119.99962 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47350 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46893 * 120.00104 * 11 9 7 14 14 H 1.48493 * 109.47057 * 240.00163 * 11 9 7 15 15 C 1.50699 * 109.46713 * 119.99617 * 2 1 3 16 16 C 1.38266 * 119.98872 * 59.73402 * 15 2 1 17 17 C 1.38227 * 120.05085 * 179.72514 * 16 15 2 18 18 C 1.38218 * 120.02334 * 0.53724 * 17 16 15 19 19 C 1.38437 * 119.97588 * 359.73323 * 18 17 16 20 20 F 1.35104 * 120.02487 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98654 * 239.99642 * 15 2 1 22 22 H 1.09004 * 109.46786 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47164 * 300.00172 * 1 2 3 24 24 H 1.08995 * 109.46766 * 60.00165 * 1 2 3 25 25 H 0.97005 * 120.00189 * 0.02562 * 6 4 2 26 26 H 0.97000 * 119.99308 * 179.97438 * 10 9 7 27 27 H 1.08000 * 119.97235 * 359.96464 * 16 15 2 28 28 H 1.07996 * 119.98404 * 180.27290 * 17 16 15 29 29 H 1.08001 * 120.00957 * 179.70675 * 18 17 16 30 30 H 1.08001 * 120.00967 * 0.03199 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1643 -0.8961 -3.5739 8 1 2.7852 -1.7741 -3.4748 9 6 1.8238 -0.4248 -4.8360 10 7 1.0638 0.6405 -4.9565 11 14 2.4465 -1.3055 -6.3611 12 1 3.2766 -2.4686 -5.9569 13 1 1.2915 -1.7780 -7.1660 14 1 3.2660 -0.3702 -7.1728 15 6 2.0323 -0.7103 1.2305 16 6 1.6936 -2.0324 1.4520 17 6 2.1582 -2.6869 2.5773 18 6 2.9529 -2.0169 3.4883 19 6 3.2882 -0.6915 3.2705 20 9 4.0654 -0.0358 4.1600 21 6 2.8267 -0.0385 2.1399 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.1494 0.5388 -2.5436 26 1 0.8265 0.9696 -5.8376 27 1 1.0686 -2.5553 0.7431 28 1 1.8965 -3.7209 2.7470 29 1 3.3119 -2.5271 4.3699 30 1 3.0873 0.9956 1.9691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173373558.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = -70.390829 kcal Electronic energy + Delta-G solvation = -16148.620005 eV Core-core repulsion = 13243.790362 eV Total energy + Delta-G solvation = -2904.829644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.70365 -39.49052 -37.75498 -34.08756 -33.48486 -31.23761 -30.43345 -29.00991 -25.28410 -24.03523 -22.50920 -21.52780 -19.02954 -18.01680 -16.83140 -16.42368 -15.91606 -15.54178 -15.34439 -14.62925 -14.37101 -14.01137 -13.59254 -13.20439 -12.93543 -12.75980 -12.27235 -11.87021 -11.64748 -11.48900 -11.42315 -11.17134 -10.90399 -10.59920 -10.36651 -10.22980 -9.55524 -8.80851 -8.35802 -8.32571 -8.00647 -6.45621 -3.86474 1.43999 1.46187 3.13839 3.25043 3.32120 3.81394 3.86382 4.16051 4.40864 4.81511 4.94466 5.08690 5.20085 5.23636 5.49671 5.55106 5.56221 5.72103 5.84726 6.05406 6.15417 6.28673 6.30192 6.34566 6.49676 6.61225 6.86484 7.14902 7.52065 8.01761 8.55996 9.13526 9.49815 10.00444 10.71962 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043874 B = 0.005470 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.043618 B = 5117.443407 C = 5234.717576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 H 0.092 0.908 4 C 0.446 3.554 5 O -0.587 6.587 6 N -0.558 5.558 7 C -0.301 4.301 8 H 0.104 0.896 9 C 0.023 3.977 10 N -0.900 5.900 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.017 4.017 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.163 4.163 19 C 0.088 3.912 20 F -0.147 7.147 21 C -0.151 4.151 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.393 0.607 26 H 0.272 0.728 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -0.679 12.096 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 H 0.110 0.890 4 C 0.231 3.769 5 O -0.472 6.472 6 N -0.194 5.194 7 C -0.430 4.430 8 H 0.122 0.878 9 C -0.178 4.178 10 N -0.541 5.541 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.018 4.018 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.182 4.182 19 C 0.069 3.931 20 F -0.126 7.126 21 C -0.170 4.170 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.227 0.773 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.205 -1.219 12.009 12.131 hybrid contribution 0.183 0.283 -0.780 0.850 sum -1.022 -0.936 11.229 11.314 Atomic orbital electron populations 1.21783 0.92747 1.02723 1.02288 1.20255 0.97140 0.99847 0.92033 0.89029 1.19615 0.85883 0.87375 0.84036 1.90544 1.42035 1.28343 1.86248 1.41864 1.45657 1.27628 1.04210 1.19775 1.29150 1.10973 0.83108 0.87836 1.25268 0.96796 0.96490 0.99289 1.69619 1.36416 1.23069 1.25013 0.85804 0.78512 0.79282 0.80784 1.19218 1.20714 1.20713 1.19290 0.94807 0.94045 0.93619 1.21042 0.99510 0.93895 0.96266 1.20942 0.96965 0.99720 0.93805 1.21013 1.02205 0.93245 1.01711 1.17585 0.95059 0.91282 0.89221 1.91459 1.72800 1.81240 1.67078 1.20982 1.00731 1.01066 0.94208 0.92056 0.92289 0.91335 0.77330 0.91856 0.85392 0.85370 0.85379 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.90 37.16 0.33 -1.70 16 2 C -0.07 -1.24 2.90 -92.92 -0.27 -1.51 16 3 H 0.09 1.45 7.88 -51.93 -0.41 1.04 16 4 C 0.45 10.27 6.98 -10.99 -0.08 10.20 16 5 O -0.59 -15.56 14.70 5.55 0.08 -15.48 16 6 N -0.56 -13.83 5.18 -10.96 -0.06 -13.89 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 10 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 11 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C -0.02 -0.29 4.39 -104.63 -0.46 -0.75 16 16 C -0.09 -1.45 7.94 -39.58 -0.31 -1.76 16 17 C -0.10 -1.34 10.04 -39.59 -0.40 -1.74 16 18 C -0.16 -2.23 10.03 -39.52 -0.40 -2.62 16 19 C 0.09 1.32 7.30 -39.42 -0.29 1.03 16 20 F -0.15 -2.19 17.27 2.25 0.04 -2.15 16 21 C -0.15 -2.36 9.65 -39.51 -0.38 -2.74 16 22 H 0.06 0.91 7.37 -51.93 -0.38 0.53 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 25 H 0.39 9.30 7.32 -40.82 -0.30 9.00 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.13 2.13 7.51 -52.49 -0.39 1.74 16 28 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.82 7.94 -52.49 -0.42 1.40 16 LS Contribution 269.70 15.07 4.06 4.06 Total: -1.00 -30.21 269.70 -5.74 -35.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.07 Total: 8.58 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.49 Total: -9.46 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.67 Total: -37.26 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.21 -5.74 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373558.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.442 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds