Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.50696 * 109.47298 * 239.99625 * 2 1 3 5 5 O 1.21288 * 120.00279 * 240.00513 * 4 2 1 6 6 N 1.34777 * 119.99735 * 59.99683 * 4 2 1 7 7 C 1.37105 * 119.99904 * 179.97438 * 6 4 2 8 8 H 1.07991 * 119.99780 * 0.02562 * 7 6 4 9 9 C 1.38954 * 119.99815 * 179.72596 * 7 6 4 10 10 N 1.31412 * 119.99962 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47350 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46893 * 120.00104 * 11 9 7 14 14 H 1.48493 * 109.47057 * 240.00163 * 11 9 7 15 15 C 1.50699 * 109.46713 * 119.99617 * 2 1 3 16 16 C 1.38266 * 119.98872 * 59.73402 * 15 2 1 17 17 C 1.38227 * 120.05085 * 179.72514 * 16 15 2 18 18 C 1.38218 * 120.02334 * 0.53724 * 17 16 15 19 19 C 1.38437 * 119.97588 * 359.73323 * 18 17 16 20 20 F 1.35104 * 120.02487 * 180.02562 * 19 18 17 21 21 C 1.38181 * 119.98654 * 239.99642 * 15 2 1 22 22 H 1.09004 * 109.46786 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47164 * 300.00172 * 1 2 3 24 24 H 1.08995 * 109.46766 * 60.00165 * 1 2 3 25 25 H 0.97005 * 120.00189 * 0.02562 * 6 4 2 26 26 H 0.97000 * 119.99308 * 179.97438 * 10 9 7 27 27 H 1.08000 * 119.97235 * 359.96464 * 16 15 2 28 28 H 1.07996 * 119.98404 * 180.27290 * 17 16 15 29 29 H 1.08001 * 120.00957 * 179.70675 * 18 17 16 30 30 H 1.08001 * 120.00967 * 0.03199 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1643 -0.8961 -3.5739 8 1 2.7852 -1.7741 -3.4748 9 6 1.8238 -0.4248 -4.8360 10 7 1.0638 0.6405 -4.9565 11 14 2.4465 -1.3055 -6.3611 12 1 3.2766 -2.4686 -5.9569 13 1 1.2915 -1.7780 -7.1660 14 1 3.2660 -0.3702 -7.1728 15 6 2.0323 -0.7103 1.2305 16 6 1.6936 -2.0324 1.4520 17 6 2.1582 -2.6869 2.5773 18 6 2.9529 -2.0169 3.4883 19 6 3.2882 -0.6915 3.2705 20 9 4.0654 -0.0358 4.1600 21 6 2.8267 -0.0385 2.1399 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.1494 0.5388 -2.5436 26 1 0.8265 0.9696 -5.8376 27 1 1.0686 -2.5553 0.7431 28 1 1.8965 -3.7209 2.7470 29 1 3.3119 -2.5271 4.3699 30 1 3.0873 0.9956 1.9691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173373558.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = -88.570046 kcal Electronic energy + Delta-G solvation = -16149.408315 eV Core-core repulsion = 13243.790362 eV Total energy + Delta-G solvation = -2905.617954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85912 -40.95668 -39.31966 -36.01031 -34.95127 -33.18223 -31.60633 -30.25227 -27.16177 -25.44355 -23.66752 -22.95902 -20.70006 -19.94204 -18.13772 -17.86957 -17.09836 -17.02692 -16.59934 -16.44048 -15.90188 -15.66816 -14.99774 -14.65175 -14.43626 -14.05236 -13.63456 -13.45984 -13.07300 -12.97312 -12.83183 -12.65331 -12.39883 -12.23902 -12.12328 -11.75914 -11.50776 -10.32624 -10.01623 -9.84820 -9.55161 -8.47241 -5.95855 0.25446 0.30127 1.36246 1.42158 1.55913 2.03762 2.29126 2.63899 3.15159 3.22271 3.37859 3.64409 3.87726 4.12428 4.23813 4.27215 4.34165 4.45189 4.52183 4.84196 4.91179 4.99682 5.14187 5.16589 5.25235 5.41650 5.42694 5.65019 5.96228 6.02746 6.58189 7.11591 7.55128 8.09762 8.70231 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.043874 B = 0.005470 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.043618 B = 5117.443407 C = 5234.717576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.061 4.061 3 H 0.109 0.891 4 C 0.445 3.555 5 O -0.625 6.625 6 N -0.568 5.568 7 C -0.334 4.334 8 H 0.079 0.921 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.992 3.008 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.272 1.272 15 C -0.038 4.038 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.155 4.155 19 C 0.078 3.922 20 F -0.147 7.147 21 C -0.158 4.158 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.397 0.603 26 H 0.278 0.722 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -0.722 12.939 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 H 0.127 0.873 4 C 0.233 3.767 5 O -0.512 6.512 6 N -0.204 5.204 7 C -0.463 4.463 8 H 0.097 0.903 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.197 1.197 15 C -0.039 4.039 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.174 4.174 19 C 0.059 3.941 20 F -0.125 7.125 21 C -0.177 4.177 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.083 0.917 25 H 0.231 0.769 26 H 0.087 0.913 27 H 0.133 0.867 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.353 -1.239 12.863 12.993 hybrid contribution 0.245 0.273 -0.952 1.020 sum -1.108 -0.966 11.911 12.002 Atomic orbital electron populations 1.21759 0.90680 1.02835 1.03626 1.20196 0.98803 0.99881 0.89391 0.87278 1.20617 0.84351 0.86714 0.85064 1.90506 1.43463 1.30126 1.87066 1.41914 1.46186 1.27860 1.04415 1.19713 1.30458 1.11323 0.84826 0.90325 1.26015 0.96582 0.97038 1.01443 1.69674 1.36617 1.23648 1.26030 0.84889 0.78210 0.78055 0.77300 1.19876 1.19527 1.19682 1.19297 0.96188 0.94580 0.93802 1.21132 1.00179 0.94041 0.97196 1.21258 0.96086 1.00994 0.92690 1.21367 1.00985 0.92676 1.02330 1.17757 0.95240 0.91962 0.89175 1.91461 1.72781 1.81340 1.66954 1.21117 1.00412 1.01818 0.94313 0.92609 0.89107 0.91732 0.76876 0.91259 0.86659 0.82419 0.82370 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.90 71.98 0.64 -3.11 16 2 C -0.06 -2.11 2.90 -12.28 -0.04 -2.14 16 3 H 0.11 3.34 7.88 -2.39 -0.02 3.32 16 4 C 0.45 20.90 6.98 87.66 0.61 21.51 16 5 O -0.62 -34.02 14.70 -3.05 -0.04 -34.07 16 6 N -0.57 -28.75 5.18 -306.99 -1.59 -30.34 16 7 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 8 H 0.08 4.74 7.16 -2.92 -0.02 4.72 16 9 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 10 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 11 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 C -0.04 -1.25 4.39 -19.87 -0.09 -1.34 16 16 C -0.11 -3.42 7.94 22.27 0.18 -3.24 16 17 C -0.09 -2.37 10.04 22.26 0.22 -2.15 16 18 C -0.16 -3.81 10.03 22.31 0.22 -3.59 16 19 C 0.08 2.19 7.30 22.37 0.16 2.35 16 20 F -0.15 -4.07 17.27 44.97 0.78 -3.30 16 21 C -0.16 -4.72 9.65 22.31 0.22 -4.50 16 22 H 0.05 1.64 7.37 -2.38 -0.02 1.62 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 1.88 7.56 -2.39 -0.02 1.86 16 25 H 0.40 19.10 7.32 -92.70 -0.68 18.42 16 26 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.12 3.89 7.51 -2.91 -0.02 3.87 16 28 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.14 3.77 7.94 -2.91 -0.02 3.75 16 Total: -1.00 -65.05 269.70 5.35 -59.70 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.49 Total: 26.41 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.41 Total: -14.28 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.31 Total: -79.07 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.04 Total: -34.07 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.05 5.35 -59.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373558.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.868 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds