Wall clock time and date at job start Sun Mar 29 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35131 * 125.61498 * 2 1 4 4 C 1.40365 * 107.11270 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.64372 * 180.02562 * 4 3 2 6 6 C 1.36547 * 106.71168 * 359.97438 * 4 3 2 7 7 C 1.46656 * 125.98992 * 179.97438 * 6 4 3 8 8 O 1.21698 * 119.99712 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99889 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46722 * 324.72200 * 10 9 7 12 12 C 1.52995 * 109.47182 * 84.72073 * 10 9 7 13 13 C 1.50694 * 109.46946 * 204.72408 * 10 9 7 14 14 H 1.08001 * 120.00329 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99654 * 180.02562 * 13 10 9 16 16 N 1.31523 * 119.99971 * 179.97438 * 15 13 10 17 17 Si 1.86804 * 120.00229 * 359.97438 * 15 13 10 18 18 H 1.48495 * 109.46709 * 90.00323 * 17 15 13 19 19 H 1.48504 * 109.46794 * 210.00291 * 17 15 13 20 20 H 1.48498 * 109.46945 * 330.00001 * 17 15 13 21 21 O 1.33936 * 125.61615 * 180.32998 * 2 1 3 22 22 H 1.09000 * 109.47126 * 89.99943 * 1 2 3 23 23 H 1.09003 * 109.46979 * 210.00053 * 1 2 3 24 24 H 1.08996 * 109.47202 * 329.99357 * 1 2 3 25 25 H 1.07995 * 126.44469 * 0.03595 * 3 2 1 26 26 H 1.08996 * 109.46944 * 269.96921 * 5 4 3 27 27 H 1.08994 * 109.47387 * 29.97348 * 5 4 3 28 28 H 1.09003 * 109.46926 * 149.97538 * 5 4 3 29 29 H 0.97005 * 120.00161 * 359.71983 * 9 7 6 30 30 H 1.09002 * 109.47097 * 180.02562 * 12 10 9 31 31 H 1.09007 * 109.47360 * 299.99766 * 12 10 9 32 32 H 1.08997 * 109.47379 * 60.00113 * 12 10 9 33 33 H 0.97002 * 120.00161 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8617 1.5144 -0.0003 6 6 3.5824 -0.7117 -0.0004 7 6 4.7415 -1.6102 -0.0013 8 8 5.8681 -1.1499 -0.0029 9 7 4.5590 -2.9455 -0.0015 10 6 5.7169 -3.8430 -0.0019 11 1 6.5179 -3.4024 -0.5956 12 6 6.2016 -4.0508 1.4343 13 6 5.3231 -5.1706 -0.5962 14 1 4.3114 -5.3301 -0.9390 15 6 6.2541 -6.1822 -0.7014 16 7 5.9104 -7.3411 -1.2197 17 14 8.0038 -5.9066 -0.1080 18 1 8.1088 -6.2961 1.3211 19 1 8.9364 -6.7328 -0.9161 20 1 8.3570 -4.4720 -0.2574 21 8 2.2870 -1.0888 -0.0063 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.9613 2.1260 0.0005 26 1 5.1599 1.7222 -1.0278 27 1 4.6513 2.4521 0.5138 28 1 5.6685 0.9915 0.5134 29 1 3.6610 -3.3123 0.0032 30 1 7.0634 -4.7182 1.4340 31 1 6.4865 -3.0905 1.8642 32 1 5.4007 -4.4914 2.0280 33 1 6.5653 -8.0528 -1.2934 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176272466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:06 Heat of formation + Delta-G solvation = -52.597600 kcal Electronic energy + Delta-G solvation = -16670.289691 eV Core-core repulsion = 13889.691925 eV Total energy + Delta-G solvation = -2780.597766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.71905 -40.51737 -37.03512 -35.14755 -34.40372 -33.38047 -31.85180 -28.87656 -28.04070 -27.24800 -23.80892 -22.45788 -21.71376 -20.81420 -19.59580 -18.28568 -17.60215 -17.38880 -16.53647 -15.95648 -15.71043 -15.09301 -14.89329 -14.63689 -14.15693 -14.09327 -14.03250 -13.71334 -13.65875 -13.53076 -13.25321 -13.21833 -12.81160 -12.53922 -12.17393 -11.64386 -11.34448 -11.06870 -10.89824 -10.62596 -10.09345 -9.38038 -8.40575 -6.48026 0.03182 1.27301 1.35179 1.35590 1.45250 1.67721 2.14174 2.24859 2.38099 2.95032 3.63789 3.80939 3.89700 4.39119 4.47409 4.49691 4.52401 4.60266 4.63487 4.73815 4.75675 4.77584 4.92702 4.98961 5.17504 5.24871 5.26712 5.36338 5.49359 5.57042 5.90333 6.12146 6.51316 6.70880 7.07827 7.23596 8.74858 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.006274 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.519818 B = 4461.917499 C = 5021.906014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.227 4.227 4 C -0.090 4.090 5 C -0.092 4.092 6 C -0.119 4.119 7 C 0.590 3.410 8 O -0.563 6.563 9 N -0.693 5.693 10 C 0.242 3.758 11 H 0.030 0.970 12 C -0.156 4.156 13 C -0.539 4.539 14 H 0.052 0.948 15 C 0.030 3.970 16 N -0.933 5.933 17 Si 0.942 3.058 18 H -0.257 1.257 19 H -0.289 1.289 20 H -0.260 1.260 21 O -0.177 6.177 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.189 0.811 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.406 0.594 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 17.343 4.387 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 C -0.246 4.246 4 C -0.093 4.093 5 C -0.148 4.148 6 C -0.171 4.171 7 C 0.377 3.623 8 O -0.445 6.445 9 N -0.340 5.340 10 C 0.137 3.863 11 H 0.048 0.952 12 C -0.214 4.214 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.170 4.170 16 N -0.571 5.571 17 Si 0.768 3.232 18 H -0.182 1.182 19 H -0.216 1.216 20 H -0.184 1.184 21 O -0.074 6.074 22 H 0.119 0.881 23 H 0.102 0.898 24 H 0.139 0.861 25 H 0.206 0.794 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.241 0.759 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.907 17.122 4.331 19.780 hybrid contribution 0.522 -0.681 -0.032 0.858 sum -8.386 16.441 4.299 18.950 Atomic orbital electron populations 1.20669 0.81237 1.05998 1.05336 1.23781 0.96069 0.83474 0.99753 1.21801 0.90288 1.01286 1.11205 1.21007 0.98122 0.91590 0.98567 1.20426 0.92821 0.98456 1.03101 1.21702 0.81968 0.94585 1.18804 1.16937 0.86541 0.81937 0.76836 1.90754 1.23440 1.76506 1.53831 1.46022 1.11222 1.04925 1.71819 1.18888 0.85364 0.88174 0.93835 0.95189 1.22352 1.00710 1.00072 0.98223 1.21203 0.98539 0.96319 1.41636 0.92954 1.25590 1.02685 0.94322 0.94413 1.69981 1.36817 1.04689 1.45637 0.85958 0.79609 0.78855 0.78751 1.18223 1.21647 1.18418 1.84013 1.15683 1.36232 1.71481 0.88089 0.89774 0.86135 0.79354 0.90564 0.88583 0.91883 0.75948 0.93488 0.93251 0.91771 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.41 71.24 0.74 -0.16 16 2 C 0.02 0.49 7.31 24.97 0.18 0.67 16 3 C -0.23 -4.99 10.73 22.07 0.24 -4.76 16 4 C -0.09 -2.65 6.20 -19.74 -0.12 -2.77 16 5 C -0.09 -2.40 9.81 71.24 0.70 -1.70 16 6 C -0.12 -4.24 7.13 24.07 0.17 -4.07 16 7 C 0.59 25.04 7.75 86.44 0.67 25.71 16 8 O -0.56 -26.29 14.40 -4.34 -0.06 -26.36 16 9 N -0.69 -30.54 5.07 -450.10 -2.28 -32.82 16 10 C 0.24 12.03 2.15 44.24 0.10 12.12 16 11 H 0.03 1.63 6.64 -2.38 -0.02 1.61 16 12 C -0.16 -6.99 8.96 71.98 0.64 -6.34 16 13 C -0.54 -30.50 9.31 25.60 0.24 -30.26 16 14 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 15 C 0.03 1.72 5.45 84.65 0.46 2.18 16 16 N -0.93 -56.71 13.96 21.45 0.30 -56.41 16 17 Si 0.94 45.00 24.37 68.60 1.67 46.67 16 18 H -0.26 -11.45 6.87 99.48 0.68 -10.76 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.26 -12.27 6.53 99.48 0.65 -11.62 16 21 O -0.18 -5.55 10.40 -5.11 -0.05 -5.60 16 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 24 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.99 6.45 -2.39 -0.02 1.98 16 29 H 0.41 16.67 8.30 -92.70 -0.77 15.90 16 30 H 0.05 2.11 3.27 -2.39 -0.01 2.11 16 31 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -69.97 279.91 3.87 -66.10 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.28 Total: 17.80 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.02 Total: -9.38 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -1.98 Total: -89.23 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.12 Total: -31.96 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Total: -69.97 3.87 -66.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176272466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.499 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds