Wall clock time and date at job start Sun Mar 29 2020 21:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47202 * 239.99923 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46898 * 120.00318 * 3 2 1 7 7 C 1.37877 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00452 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99719 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99536 * 182.95594 * 10 9 7 12 12 C 1.53004 * 109.46756 * 176.81752 * 11 10 9 13 13 C 1.53002 * 117.49810 * 245.64263 * 12 11 10 14 14 C 1.52997 * 60.00082 * 252.51004 * 13 12 11 15 15 C 1.46899 * 110.99378 * 59.00588 * 10 9 7 16 16 C 1.52998 * 109.47677 * 63.35283 * 15 10 9 17 17 F 1.39903 * 109.46702 * 62.35229 * 16 15 10 18 18 F 1.39898 * 109.47348 * 182.35103 * 16 15 10 19 19 F 1.39896 * 109.46784 * 302.35523 * 16 15 10 20 20 H 0.97003 * 120.00332 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46815 * 60.00237 * 9 7 2 22 22 H 1.08998 * 109.47299 * 300.00459 * 9 7 2 23 23 H 1.08995 * 109.47601 * 296.81005 * 11 10 9 24 24 H 1.08990 * 109.47693 * 56.81750 * 11 10 9 25 25 H 1.09000 * 115.55368 * 31.34984 * 12 11 10 26 26 H 1.09003 * 117.49662 * 359.97438 * 13 12 11 27 27 H 1.08999 * 117.49687 * 145.01772 * 13 12 11 28 28 H 1.09003 * 117.50076 * 252.50753 * 14 13 12 29 29 H 1.09001 * 117.50310 * 107.48700 * 14 13 12 30 30 H 1.09013 * 109.46591 * 183.35538 * 15 10 9 31 31 H 1.08997 * 109.47580 * 303.34427 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5067 -4.9057 -0.0725 12 6 2.5327 -6.0380 -0.1517 13 6 2.5784 -6.8610 -1.4407 14 6 2.0019 -7.4729 -0.1624 15 6 3.0854 -3.5573 1.1732 16 6 2.2498 -3.7189 2.4446 17 9 1.6338 -4.9751 2.4412 18 9 3.0800 -3.6097 3.5654 19 9 1.2715 -2.7199 2.4898 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 0.8913 -5.0349 0.8177 24 1 0.8726 -4.9274 -0.9588 25 1 3.4763 -5.8542 0.3621 26 1 1.8772 -6.5961 -2.2321 27 1 3.5522 -7.2187 -1.7752 28 1 2.5964 -8.2333 0.3441 29 1 0.9217 -7.6103 -0.1129 30 1 3.8205 -4.3603 1.1169 31 1 3.5986 -2.5959 1.1955 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177030744.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:31 Heat of formation + Delta-G solvation = -127.565612 kcal Electronic energy + Delta-G solvation = -18107.363494 eV Core-core repulsion = 14781.658130 eV Total energy + Delta-G solvation = -3325.705364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.10967 -48.58995 -48.53668 -39.33327 -37.05027 -34.58453 -30.45397 -29.60946 -26.23880 -24.78179 -23.18091 -22.69898 -21.21036 -19.63328 -19.48512 -18.70997 -17.61928 -16.98286 -16.57438 -16.11445 -15.89065 -15.61474 -15.29840 -14.99082 -14.77708 -14.64052 -14.40897 -14.09534 -13.41648 -13.05298 -13.04123 -12.83031 -12.77036 -12.46685 -12.26895 -12.13227 -11.81427 -11.31739 -11.02894 -10.81948 -10.52837 -9.10475 -8.16408 -6.24781 1.43551 1.45898 1.52968 1.95873 2.41677 2.79007 3.00756 3.12257 3.18057 3.23361 3.46595 3.87381 4.07068 4.17363 4.36622 4.41623 4.67917 4.72998 4.81858 4.86087 5.09749 5.22420 5.32229 5.34305 5.37339 5.63623 5.99572 6.11227 6.47476 6.87977 7.43122 8.95098 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.027696 B = 0.008895 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.740952 B = 3147.030872 C = 3685.990437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.169 3.831 10 N -0.519 5.519 11 C 0.056 3.944 12 C -0.158 4.158 13 C -0.171 4.171 14 C -0.169 4.169 15 C 0.027 3.973 16 C 0.410 3.590 17 F -0.183 7.183 18 F -0.194 7.194 19 F -0.184 7.184 20 H 0.262 0.738 21 H 0.000 1.000 22 H 0.017 0.983 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -11.614 2.268 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.044 3.956 10 N -0.240 5.240 11 C -0.072 4.072 12 C -0.176 4.176 13 C -0.207 4.207 14 C -0.206 4.206 15 C -0.104 4.104 16 C 0.353 3.647 17 F -0.165 7.165 18 F -0.176 7.176 19 F -0.165 7.165 20 H 0.071 0.929 21 H 0.018 0.982 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.560 -11.456 1.832 13.328 hybrid contribution -0.810 1.022 0.845 1.554 sum 5.750 -10.434 2.677 12.211 Atomic orbital electron populations 1.70074 1.07707 1.27715 1.51681 1.25816 0.95620 1.02928 0.94956 0.85550 0.78246 0.78414 0.79118 1.19221 1.21303 1.19223 1.21368 0.93570 0.90768 1.50186 0.91304 1.20136 0.91159 0.88093 0.96206 1.62185 1.23343 1.03287 1.35139 1.22219 0.95743 0.87845 1.01346 1.22214 1.00444 0.91389 1.03589 1.23042 1.03149 1.03388 0.91162 1.23012 1.01319 0.94889 1.01370 1.23778 0.96333 1.07877 0.82397 1.22961 0.80303 0.73030 0.88382 1.93046 1.84327 1.42711 1.96393 1.93124 1.71718 1.95827 1.56888 1.93151 1.65019 1.62117 1.96244 0.92909 0.98226 0.96526 0.93158 0.91967 0.87075 0.89441 0.87441 0.87096 0.89097 0.84465 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.52 -28.29 8.26 25.60 0.21 -28.08 16 8 H 0.07 3.56 6.61 -2.91 -0.02 3.54 16 9 C 0.17 8.71 4.19 85.56 0.36 9.07 16 10 N -0.52 -21.09 4.81 -900.80 -4.33 -25.42 16 11 C 0.06 1.95 4.68 86.31 0.40 2.35 16 12 C -0.16 -4.25 5.22 -10.79 -0.06 -4.30 16 13 C -0.17 -3.90 10.18 30.59 0.31 -3.58 16 14 C -0.17 -3.66 10.25 30.59 0.31 -3.35 16 15 C 0.03 0.95 5.11 86.30 0.44 1.39 16 16 C 0.41 15.10 3.07 71.98 0.22 15.32 16 17 F -0.18 -6.32 13.48 44.97 0.61 -5.72 16 18 F -0.19 -6.63 17.32 44.97 0.78 -5.85 16 19 F -0.18 -8.44 13.48 44.97 0.61 -7.84 16 20 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 21 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 22 H 0.02 0.95 5.01 -2.39 -0.01 0.94 16 23 H 0.05 1.86 5.21 -2.39 -0.01 1.84 16 24 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 25 H 0.11 2.79 5.96 -2.39 -0.01 2.77 16 26 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 27 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.14 3.72 5.96 -2.38 -0.01 3.70 16 31 H 0.12 4.31 6.30 -2.39 -0.02 4.30 16 Total: -1.00 -61.49 261.49 3.78 -57.71 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.15 Total: 7.35 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 2.67 Total: -10.43 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -4.05 Total: -80.92 kcal Atomic # 9 Polarization: -21.39 SS G_CDS: 1.99 Total: -19.40 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.49 3.78 -57.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177030744.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.857 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds