Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47017 * 274.22312 * 3 2 1 5 5 H 1.48497 * 109.47360 * 34.22074 * 3 2 1 6 6 H 1.48500 * 109.47290 * 154.22150 * 3 2 1 7 7 C 1.38814 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99819 * 31.53919 * 7 2 1 9 9 N 1.36941 * 119.99609 * 211.53550 * 7 2 1 10 10 C 1.46500 * 119.99954 * 217.23193 * 9 7 2 11 11 C 1.52994 * 109.47150 * 92.22092 * 10 9 7 12 12 C 1.53791 * 113.61260 * 84.45531 * 11 10 9 13 13 C 1.54046 * 86.98476 * 140.02012 * 12 11 10 14 14 C 1.53778 * 113.61596 * 182.06024 * 11 10 9 15 15 C 1.46493 * 120.00122 * 37.24024 * 9 7 2 16 16 C 1.52996 * 109.47642 * 95.59079 * 15 9 7 17 17 F 1.39908 * 109.46640 * 64.50659 * 16 15 9 18 18 F 1.39898 * 109.47439 * 184.50371 * 16 15 9 19 19 F 1.39901 * 109.47037 * 304.50938 * 16 15 9 20 20 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47259 * 332.22530 * 10 9 7 22 22 H 1.08999 * 109.47485 * 212.22575 * 10 9 7 23 23 H 1.08999 * 112.85474 * 313.26612 * 11 10 9 24 24 H 1.08993 * 113.61488 * 254.61635 * 12 11 10 25 25 H 1.08999 * 113.60690 * 25.51564 * 12 11 10 26 26 H 1.09003 * 113.61947 * 220.02453 * 13 12 11 27 27 H 1.09001 * 113.61745 * 89.11624 * 13 12 11 28 28 H 1.09002 * 113.61817 * 334.49097 * 14 11 10 29 29 H 1.09005 * 113.61475 * 105.30963 * 14 11 10 30 30 H 1.09003 * 109.46868 * 215.59504 * 15 9 7 31 31 H 1.09000 * 109.47117 * 335.58955 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4084 2.0979 -1.3963 5 1 1.4952 2.6253 0.7873 6 1 3.5896 1.4161 0.6089 7 6 2.0102 -1.2022 0.0005 8 1 1.5898 -2.0686 -0.4883 9 7 3.2280 -1.2895 0.6209 10 6 4.2916 -2.1087 0.0346 11 6 5.1599 -1.2403 -0.8779 12 6 6.2661 -0.4762 -0.1310 13 6 7.1843 -0.8023 -1.3241 14 6 6.2813 -2.0194 -1.5852 15 6 3.4670 -0.5638 1.8708 16 6 3.2191 -1.4968 3.0577 17 9 4.1553 -2.5363 3.0371 18 9 3.3471 -0.7777 4.2509 19 9 1.9285 -2.0297 2.9704 20 1 -0.4850 0.8400 -0.0004 21 1 3.8488 -2.9172 -0.5471 22 1 4.9073 -2.5285 0.8302 23 1 4.5732 -0.6133 -1.5493 24 1 6.0598 0.5877 -0.0150 25 1 6.5737 -0.9528 0.7998 26 1 8.2008 -1.0673 -1.0333 27 1 7.1510 -0.0558 -2.1176 28 1 6.5932 -2.9171 -1.0514 29 1 6.0867 -2.2017 -2.6422 30 1 4.4981 -0.2113 1.8948 31 1 2.7902 0.2885 1.9312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178461732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = -120.240104 kcal Electronic energy + Delta-G solvation = -18171.537530 eV Core-core repulsion = 14846.149825 eV Total energy + Delta-G solvation = -3325.387706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.13124 -46.75554 -46.50510 -38.58023 -35.63111 -31.83583 -29.25547 -27.06813 -25.27337 -23.71552 -22.76924 -20.61931 -18.95424 -17.78235 -17.56292 -17.39041 -15.98437 -15.39169 -14.94461 -14.29410 -14.05059 -13.71708 -13.45696 -13.21555 -13.03156 -12.79696 -12.74354 -12.58885 -12.17379 -12.11890 -11.73742 -11.59188 -11.04783 -10.89181 -10.61837 -10.32178 -10.22524 -9.96717 -9.68885 -9.54224 -8.63529 -7.11904 -6.20546 -3.55592 3.22834 3.36703 3.40122 3.74381 4.35264 4.52090 4.85391 4.97115 5.02177 5.08093 5.12847 5.21109 5.30401 5.49421 5.88079 5.97430 6.03204 6.05334 6.14712 6.16223 6.26563 6.30789 6.42761 6.64641 6.72131 6.99779 7.80532 8.23457 8.74972 9.51298 9.87734 10.94006 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.013606 C = 0.009641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.474587 B = 2057.430472 C = 2903.490202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.049 3.951 3 Si 0.845 3.155 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.285 4.285 8 H 0.084 0.916 9 N -0.579 5.579 10 C 0.150 3.850 11 C -0.125 4.125 12 C -0.139 4.139 13 C -0.142 4.142 14 C -0.137 4.137 15 C 0.112 3.888 16 C 0.409 3.591 17 F -0.200 7.200 18 F -0.209 7.209 19 F -0.172 7.172 20 H 0.266 0.734 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.060 -1.129 1.403 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.154 4.154 3 Si 0.671 3.329 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.413 4.413 8 H 0.101 0.899 9 N -0.296 5.296 10 C 0.025 3.975 11 C -0.145 4.145 12 C -0.176 4.176 13 C -0.179 4.179 14 C -0.175 4.175 15 C -0.020 4.020 16 C 0.351 3.649 17 F -0.182 7.182 18 F -0.191 7.191 19 F -0.154 7.154 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.841 -1.086 1.372 10.981 hybrid contribution 0.289 0.942 0.191 1.004 sum 11.130 -0.144 1.563 11.240 Atomic orbital electron populations 1.70033 1.06276 1.27188 1.47195 1.25473 0.94852 0.97729 0.97367 0.87397 0.81633 0.85501 0.78392 1.21176 1.21673 1.18349 1.18695 0.92508 0.95875 1.34218 0.89884 1.43972 1.12068 1.55246 1.18356 1.21144 0.88992 0.92813 0.94522 1.23151 0.94613 0.98419 0.98349 1.23006 0.97099 1.00394 0.97139 1.22839 0.97623 0.98624 0.98860 1.22890 0.97226 0.97057 1.00331 1.22730 1.02334 0.93351 0.83540 1.23285 0.74239 0.82041 0.85317 1.93051 1.66365 1.62111 1.96698 1.93073 1.95839 1.78238 1.51958 1.93186 1.38634 1.87385 1.96178 0.92386 0.92099 0.93223 0.89014 0.92194 0.90633 0.92248 0.90780 0.90529 0.92036 0.90264 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.34 13.97 55.49 0.78 -24.57 16 2 C 0.05 1.34 5.05 -17.43 -0.09 1.25 16 3 Si 0.84 20.11 26.27 -169.99 -4.47 15.64 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -5.68 5.69 56.52 0.32 -5.36 16 7 C -0.29 -7.52 9.50 -15.06 -0.14 -7.67 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.58 -12.94 1.94 -173.25 -0.34 -13.27 16 10 C 0.15 2.83 5.36 -4.05 -0.02 2.81 16 11 C -0.12 -2.10 3.96 -89.81 -0.36 -2.45 16 12 C -0.14 -2.09 6.79 -25.77 -0.17 -2.27 16 13 C -0.14 -1.83 8.09 -25.78 -0.21 -2.04 16 14 C -0.14 -1.86 7.64 -25.92 -0.20 -2.06 16 15 C 0.11 2.34 3.85 -4.05 -0.02 2.33 16 16 C 0.41 8.46 3.30 37.16 0.12 8.58 16 17 F -0.20 -3.91 15.85 2.25 0.04 -3.88 16 18 F -0.21 -4.06 17.32 2.25 0.04 -4.02 16 19 F -0.17 -4.06 16.88 2.25 0.04 -4.02 16 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 22 H 0.05 0.87 6.54 -51.93 -0.34 0.53 16 23 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.09 7.94 -51.93 -0.41 0.67 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.47 7.20 -51.93 -0.37 1.09 16 31 H 0.09 2.09 4.47 -51.93 -0.23 1.85 16 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -27.80 265.01 -4.95 -32.75 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.95 Total: -1.10 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.08 Total: -1.52 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.84 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 0.11 Total: -11.92 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.47 Total: 15.64 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.80 -4.95 -32.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178461732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.495 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds