Wall clock time and date at job start Sun Mar 29 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47017 * 274.22312 * 3 2 1 5 5 H 1.48497 * 109.47360 * 34.22074 * 3 2 1 6 6 H 1.48500 * 109.47290 * 154.22150 * 3 2 1 7 7 C 1.38814 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99819 * 31.53919 * 7 2 1 9 9 N 1.36941 * 119.99609 * 211.53550 * 7 2 1 10 10 C 1.46500 * 119.99954 * 217.23193 * 9 7 2 11 11 C 1.52994 * 109.47150 * 92.22092 * 10 9 7 12 12 C 1.53791 * 113.61260 * 84.45531 * 11 10 9 13 13 C 1.54046 * 86.98476 * 140.02012 * 12 11 10 14 14 C 1.53778 * 113.61596 * 182.06024 * 11 10 9 15 15 C 1.46493 * 120.00122 * 37.24024 * 9 7 2 16 16 C 1.52996 * 109.47642 * 95.59079 * 15 9 7 17 17 F 1.39908 * 109.46640 * 64.50659 * 16 15 9 18 18 F 1.39898 * 109.47439 * 184.50371 * 16 15 9 19 19 F 1.39901 * 109.47037 * 304.50938 * 16 15 9 20 20 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47259 * 332.22530 * 10 9 7 22 22 H 1.08999 * 109.47485 * 212.22575 * 10 9 7 23 23 H 1.08999 * 112.85474 * 313.26612 * 11 10 9 24 24 H 1.08993 * 113.61488 * 254.61635 * 12 11 10 25 25 H 1.08999 * 113.60690 * 25.51564 * 12 11 10 26 26 H 1.09003 * 113.61947 * 220.02453 * 13 12 11 27 27 H 1.09001 * 113.61745 * 89.11624 * 13 12 11 28 28 H 1.09002 * 113.61817 * 334.49097 * 14 11 10 29 29 H 1.09005 * 113.61475 * 105.30963 * 14 11 10 30 30 H 1.09003 * 109.46868 * 215.59504 * 15 9 7 31 31 H 1.09000 * 109.47117 * 335.58955 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4084 2.0979 -1.3963 5 1 1.4952 2.6253 0.7873 6 1 3.5896 1.4161 0.6089 7 6 2.0102 -1.2022 0.0005 8 1 1.5898 -2.0686 -0.4883 9 7 3.2280 -1.2895 0.6209 10 6 4.2916 -2.1087 0.0346 11 6 5.1599 -1.2403 -0.8779 12 6 6.2661 -0.4762 -0.1310 13 6 7.1843 -0.8023 -1.3241 14 6 6.2813 -2.0194 -1.5852 15 6 3.4670 -0.5638 1.8708 16 6 3.2191 -1.4968 3.0577 17 9 4.1553 -2.5363 3.0371 18 9 3.3471 -0.7777 4.2509 19 9 1.9285 -2.0297 2.9704 20 1 -0.4850 0.8400 -0.0004 21 1 3.8488 -2.9172 -0.5471 22 1 4.9073 -2.5285 0.8302 23 1 4.5732 -0.6133 -1.5493 24 1 6.0598 0.5877 -0.0150 25 1 6.5737 -0.9528 0.7998 26 1 8.2008 -1.0673 -1.0333 27 1 7.1510 -0.0558 -2.1176 28 1 6.5932 -2.9171 -1.0514 29 1 6.0867 -2.2017 -2.6422 30 1 4.4981 -0.2113 1.8948 31 1 2.7902 0.2885 1.9312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178461732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:35 Heat of formation + Delta-G solvation = -135.345729 kcal Electronic energy + Delta-G solvation = -18172.192559 eV Core-core repulsion = 14846.149825 eV Total energy + Delta-G solvation = -3326.042735 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.80603 -48.37030 -48.26470 -39.84478 -37.32293 -33.85974 -30.83385 -28.79346 -26.40069 -25.40902 -24.33212 -22.23339 -20.14273 -19.58106 -19.27195 -19.13568 -17.74608 -16.86330 -16.68924 -15.64940 -15.54489 -15.38586 -15.14998 -14.88077 -14.73742 -14.50624 -14.48016 -14.42516 -13.79590 -13.31166 -13.18118 -13.11586 -12.68741 -12.56135 -12.25957 -12.01170 -11.68485 -11.36422 -11.02547 -10.90860 -10.67308 -8.97095 -8.29945 -5.62955 1.31802 1.43730 1.49286 2.06130 2.37501 2.73690 3.12234 3.25751 3.34169 3.69932 3.89138 3.96922 4.02367 4.15691 4.35509 4.49835 4.65486 4.83105 4.96343 4.97241 5.00016 5.15622 5.19276 5.28398 5.50364 5.73554 5.85638 6.16233 6.81124 7.48687 7.89559 8.89034 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.013606 C = 0.009641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.474587 B = 2057.430472 C = 2903.490202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.002 4.002 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.227 1.227 7 C -0.274 4.274 8 H 0.043 0.957 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.135 4.135 12 C -0.139 4.139 13 C -0.130 4.130 14 C -0.128 4.128 15 C 0.109 3.891 16 C 0.414 3.586 17 F -0.191 7.191 18 F -0.198 7.198 19 F -0.194 7.194 20 H 0.266 0.734 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.999 -0.634 1.869 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.150 1.150 7 C -0.403 4.403 8 H 0.061 0.939 9 N -0.306 5.306 10 C 0.026 3.974 11 C -0.155 4.155 12 C -0.177 4.177 13 C -0.167 4.167 14 C -0.166 4.166 15 C -0.022 4.022 16 C 0.356 3.644 17 F -0.172 7.172 18 F -0.180 7.180 19 F -0.176 7.176 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.832 -0.602 1.847 13.968 hybrid contribution -0.632 0.661 0.076 0.918 sum 13.200 0.059 1.923 13.340 Atomic orbital electron populations 1.70138 1.08060 1.27896 1.50149 1.26023 0.95289 1.01003 0.97810 0.86398 0.81655 0.80732 0.77971 1.21845 1.22162 1.14976 1.18473 0.93771 0.94544 1.33477 0.93921 1.44008 1.11724 1.55840 1.19057 1.21255 0.88419 0.92462 0.95245 1.23059 0.95095 0.98912 0.98478 1.23045 0.96585 0.99700 0.98322 1.22786 0.98286 0.97891 0.97785 1.22877 0.95575 0.97757 1.00414 1.22797 1.03831 0.92733 0.82831 1.23060 0.73525 0.82117 0.85664 1.93067 1.65759 1.61717 1.96692 1.93095 1.95709 1.77937 1.51259 1.93153 1.40347 1.87744 1.96324 0.92505 0.93393 0.91459 0.91699 0.92880 0.89462 0.89986 0.90494 0.89130 0.91647 0.86866 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.47 13.97 21.65 0.30 -55.16 16 2 C 0.00 -0.10 5.05 84.86 0.43 0.33 16 3 Si 0.91 41.64 26.27 68.60 1.80 43.44 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.23 -9.09 5.69 99.48 0.57 -8.52 16 7 C -0.27 -14.72 9.50 84.03 0.80 -13.92 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 9 N -0.59 -25.74 1.94 -702.03 -1.36 -27.10 16 10 C 0.15 5.42 5.36 86.38 0.46 5.88 16 11 C -0.14 -4.24 3.96 -10.27 -0.04 -4.28 16 12 C -0.14 -3.66 6.79 31.21 0.21 -3.45 16 13 C -0.13 -2.83 8.09 31.21 0.25 -2.58 16 14 C -0.13 -3.08 7.64 31.12 0.24 -2.85 16 15 C 0.11 4.32 3.85 86.38 0.33 4.65 16 16 C 0.41 16.32 3.30 71.98 0.24 16.56 16 17 F -0.19 -6.94 15.85 44.97 0.71 -6.23 16 18 F -0.20 -7.20 17.32 44.97 0.78 -6.42 16 19 F -0.19 -9.08 16.88 44.97 0.76 -8.32 16 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 21 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 22 H 0.07 2.18 6.54 -2.39 -0.02 2.17 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.95 8.10 -2.39 -0.02 1.93 16 29 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.11 3.73 7.20 -2.39 -0.02 3.72 16 31 H 0.08 3.40 4.47 -2.39 -0.01 3.39 16 Total: -1.00 -60.33 265.01 6.91 -53.42 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 0.99 Total: 6.03 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 2.92 Total: 0.34 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.06 Total: -82.27 kcal Atomic # 9 Polarization: -23.22 SS G_CDS: 2.25 Total: -20.97 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.80 Total: 43.44 kcal Total: -60.33 6.91 -53.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178461732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.924 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds