Wall clock time and date at job start Sun Mar 29 2020 22:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 117.00226 * 2 1 4 4 C 1.38722 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.38104 * 120.00015 * 180.02562 * 4 3 2 6 6 C 1.38721 * 120.00033 * 359.69964 * 5 4 3 7 7 O 1.35986 * 119.99518 * 180.29654 * 6 5 4 8 8 C 1.38670 * 120.00293 * 0.55415 * 6 5 4 9 9 C 1.50693 * 120.00334 * 179.75143 * 8 6 5 10 10 H 1.09000 * 109.47153 * 324.71847 * 9 8 6 11 11 C 1.52999 * 109.47410 * 84.71987 * 9 8 6 12 12 N 1.46507 * 109.47158 * 204.72176 * 9 8 6 13 13 C 1.36936 * 119.99957 * 154.99669 * 12 9 8 14 14 H 1.08001 * 119.99938 * 359.97438 * 13 12 9 15 15 C 1.38817 * 119.99709 * 180.02562 * 13 12 9 16 16 N 1.31617 * 119.99464 * 180.27733 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 90.00170 * 17 15 13 19 19 H 1.48499 * 109.47026 * 210.00018 * 17 15 13 20 20 H 1.48496 * 109.47474 * 330.00054 * 17 15 13 21 21 C 1.38155 * 119.99619 * 359.46926 * 8 6 5 22 22 H 1.08999 * 109.46883 * 60.00216 * 1 2 3 23 23 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46874 * 300.00034 * 1 2 3 25 25 H 1.08003 * 119.99350 * 359.97227 * 4 3 2 26 26 H 1.08005 * 119.99859 * 179.97438 * 5 4 3 27 27 H 0.96701 * 114.00328 * 270.25140 * 7 6 5 28 28 H 1.09003 * 109.46770 * 180.02562 * 11 9 8 29 29 H 1.08996 * 109.46873 * 299.99870 * 11 9 8 30 30 H 1.08999 * 109.46965 * 60.00355 * 11 9 8 31 31 H 0.97000 * 119.99595 * 334.99869 * 12 9 8 32 32 H 0.97004 * 119.99499 * 179.72646 * 16 15 13 33 33 H 1.07997 * 120.00226 * 180.28281 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0000 6 6 3.3033 3.6780 0.0052 7 8 3.9206 4.8897 0.0108 8 6 4.0586 2.5150 -0.0006 9 6 5.5634 2.5938 -0.0006 10 1 5.8822 3.4535 -0.5901 11 6 6.0662 2.7461 1.4364 12 7 6.1166 1.3692 -0.5844 13 6 7.3589 1.3857 -1.1601 14 1 7.9308 2.3016 -1.1841 15 6 7.8828 0.2255 -1.7137 16 7 9.0792 0.2401 -2.2621 17 14 6.8933 -1.3583 -1.6726 18 1 6.0548 -1.4498 -2.8949 19 1 7.8184 -2.5187 -1.6190 20 1 6.0200 -1.3655 -0.4716 21 6 3.4313 1.2841 -0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2124 2.3184 0.0005 26 1 1.3298 4.5113 0.0000 27 1 4.0989 5.2443 -0.8710 28 1 7.1547 2.8035 1.4362 29 1 5.6547 3.6572 1.8706 30 1 5.7474 1.8864 2.0258 31 1 5.6027 0.5468 -0.5631 32 1 9.4469 -0.5716 -2.6454 33 1 4.0194 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182322215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:36 Heat of formation + Delta-G solvation = -36.741427 kcal Electronic energy + Delta-G solvation = -16837.400640 eV Core-core repulsion = 14057.490449 eV Total energy + Delta-G solvation = -2779.910191 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27902 -38.50824 -36.16159 -35.09939 -32.21687 -30.35336 -29.53587 -28.10907 -27.07526 -23.97016 -23.04343 -21.75234 -19.92156 -18.59644 -17.83154 -17.08775 -16.37113 -15.76137 -15.24358 -14.73538 -14.30997 -13.94830 -13.85641 -13.15588 -13.04555 -12.61429 -12.32501 -12.19185 -12.15089 -11.67128 -11.36176 -10.94120 -10.88599 -10.79192 -10.62749 -10.13265 -9.94893 -9.54327 -9.01608 -8.63076 -7.89367 -7.28124 -5.76086 -3.11853 1.43241 1.45457 3.29150 3.39625 3.43147 3.47226 3.75155 4.46532 4.60515 4.81723 4.90764 5.03676 5.04354 5.15244 5.34551 5.47476 5.58298 5.61519 5.75498 5.91933 6.13519 6.23697 6.31986 6.39691 6.46563 6.65833 6.69322 6.90448 7.02325 7.40949 7.88128 7.99882 8.42721 9.20304 9.93009 10.12452 11.42073 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.008735 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.540871 B = 3204.566074 C = 4219.691173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.119 3.881 4 C -0.206 4.206 5 C -0.106 4.106 6 C 0.069 3.931 7 O -0.492 6.492 8 C -0.053 4.053 9 C 0.218 3.782 10 H 0.070 0.930 11 C -0.156 4.156 12 N -0.749 5.749 13 C -0.243 4.243 14 H 0.092 0.908 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.130 4.130 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.385 0.615 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.362 0.638 32 H 0.259 0.741 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 4.658 4.653 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.125 4.125 6 C 0.024 3.976 7 O -0.302 6.302 8 C -0.054 4.054 9 C 0.109 3.891 10 H 0.088 0.912 11 C -0.216 4.216 12 N -0.394 5.394 13 C -0.373 4.373 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.709 3.291 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.149 4.149 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.240 0.760 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.197 0.803 32 H 0.070 0.930 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.734 4.458 5.163 19.001 hybrid contribution -0.882 -1.063 -0.549 1.486 sum -18.616 3.395 4.615 19.478 Atomic orbital electron populations 1.23017 0.78833 1.03702 1.01131 1.86117 1.21011 1.27027 1.88915 1.18996 0.92184 0.84064 0.97364 1.20966 0.99634 0.91830 1.10021 1.21092 0.93756 0.97470 1.00174 1.18102 0.89766 0.84686 1.05040 1.84860 1.79961 1.32055 1.33297 1.20612 0.97840 0.91441 0.95528 1.19029 0.85042 0.91172 0.93847 0.91221 1.22315 1.01867 1.00050 0.97339 1.42981 1.19211 1.06696 1.70550 1.19064 0.91566 0.97553 1.29072 0.89003 1.24639 0.96484 0.97385 1.00435 1.69697 1.16369 1.27871 1.44124 0.86638 0.79714 0.84777 0.77957 1.20927 1.21596 1.20281 1.20209 0.90933 0.98704 1.05094 0.92788 0.88451 0.92816 0.85511 0.85466 0.76023 0.91877 0.93421 0.93613 0.80299 0.93048 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.66 10.50 -19.67 -0.21 -4.87 16 3 C 0.12 1.86 6.69 -39.24 -0.26 1.60 16 4 C -0.21 -2.70 9.03 -39.45 -0.36 -3.06 16 5 C -0.11 -1.41 9.98 -39.45 -0.39 -1.80 16 6 C 0.07 1.07 6.68 -39.24 -0.26 0.80 16 7 O -0.49 -6.84 12.64 -19.70 -0.25 -7.09 16 8 C -0.05 -0.95 5.07 -104.50 -0.53 -1.47 16 9 C 0.22 4.42 2.82 -69.08 -0.19 4.22 16 10 H 0.07 1.42 7.63 -51.93 -0.40 1.02 16 11 C -0.16 -2.96 9.47 37.16 0.35 -2.61 16 12 N -0.75 -18.18 4.84 -54.55 -0.26 -18.45 16 13 C -0.24 -6.89 10.41 -15.06 -0.16 -7.05 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 17 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 21 C -0.13 -2.36 9.17 -39.45 -0.36 -2.72 16 22 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 23 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.13 1.28 6.29 -52.48 -0.33 0.95 16 26 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.38 3.78 9.06 45.56 0.41 4.19 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.36 8.70 3.26 -40.82 -0.13 8.57 16 32 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.13 2.63 6.07 -52.49 -0.32 2.31 16 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -33.22 279.69 -4.98 -38.20 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.27 Total: 9.56 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.27 Total: -10.74 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.51 Total: -47.10 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.46 Total: -11.96 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.22 -4.98 -38.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182322215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds