Wall clock time and date at job start Sun Mar 29 2020 22:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 117.00226 * 2 1 4 4 C 1.38722 * 120.00193 * 0.02562 * 3 2 1 5 5 C 1.38104 * 120.00015 * 180.02562 * 4 3 2 6 6 C 1.38721 * 120.00033 * 359.69964 * 5 4 3 7 7 O 1.35986 * 119.99518 * 180.29654 * 6 5 4 8 8 C 1.38670 * 120.00293 * 0.55415 * 6 5 4 9 9 C 1.50693 * 120.00334 * 179.75143 * 8 6 5 10 10 H 1.09000 * 109.47153 * 324.71847 * 9 8 6 11 11 C 1.52999 * 109.47410 * 84.71987 * 9 8 6 12 12 N 1.46507 * 109.47158 * 204.72176 * 9 8 6 13 13 C 1.36936 * 119.99957 * 154.99669 * 12 9 8 14 14 H 1.08001 * 119.99938 * 359.97438 * 13 12 9 15 15 C 1.38817 * 119.99709 * 180.02562 * 13 12 9 16 16 N 1.31617 * 119.99464 * 180.27733 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 90.00170 * 17 15 13 19 19 H 1.48499 * 109.47026 * 210.00018 * 17 15 13 20 20 H 1.48496 * 109.47474 * 330.00054 * 17 15 13 21 21 C 1.38155 * 119.99619 * 359.46926 * 8 6 5 22 22 H 1.08999 * 109.46883 * 60.00216 * 1 2 3 23 23 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46874 * 300.00034 * 1 2 3 25 25 H 1.08003 * 119.99350 * 359.97227 * 4 3 2 26 26 H 1.08005 * 119.99859 * 179.97438 * 5 4 3 27 27 H 0.96701 * 114.00328 * 270.25140 * 7 6 5 28 28 H 1.09003 * 109.46770 * 180.02562 * 11 9 8 29 29 H 1.08996 * 109.46873 * 299.99870 * 11 9 8 30 30 H 1.08999 * 109.46965 * 60.00355 * 11 9 8 31 31 H 0.97000 * 119.99595 * 334.99869 * 12 9 8 32 32 H 0.97004 * 119.99499 * 179.72646 * 16 15 13 33 33 H 1.07997 * 120.00226 * 180.28281 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0000 6 6 3.3033 3.6780 0.0052 7 8 3.9206 4.8897 0.0108 8 6 4.0586 2.5150 -0.0006 9 6 5.5634 2.5938 -0.0006 10 1 5.8822 3.4535 -0.5901 11 6 6.0662 2.7461 1.4364 12 7 6.1166 1.3692 -0.5844 13 6 7.3589 1.3857 -1.1601 14 1 7.9308 2.3016 -1.1841 15 6 7.8828 0.2255 -1.7137 16 7 9.0792 0.2401 -2.2621 17 14 6.8933 -1.3583 -1.6726 18 1 6.0548 -1.4498 -2.8949 19 1 7.8184 -2.5187 -1.6190 20 1 6.0200 -1.3655 -0.4716 21 6 3.4313 1.2841 -0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2124 2.3184 0.0005 26 1 1.3298 4.5113 0.0000 27 1 4.0989 5.2443 -0.8710 28 1 7.1547 2.8035 1.4362 29 1 5.6547 3.6572 1.8706 30 1 5.7474 1.8864 2.0258 31 1 5.6027 0.5468 -0.5631 32 1 9.4469 -0.5716 -2.6454 33 1 4.0194 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182322215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:35 Heat of formation + Delta-G solvation = -61.663931 kcal Electronic energy + Delta-G solvation = -16838.481361 eV Core-core repulsion = 14057.490449 eV Total energy + Delta-G solvation = -2780.990912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40973 -39.60041 -37.62314 -36.43252 -34.21435 -31.84881 -31.02430 -29.44008 -27.92743 -25.84989 -24.42550 -23.04643 -21.40985 -20.25741 -19.03824 -18.51047 -17.58743 -16.70981 -16.50617 -16.31202 -16.08191 -15.24352 -15.07154 -14.83480 -14.51981 -14.06410 -13.83323 -13.46950 -13.36246 -13.12733 -12.89750 -12.64053 -12.36823 -12.27544 -11.94582 -11.81548 -11.73506 -11.17937 -11.08601 -9.89936 -9.38895 -8.98814 -8.04763 -5.37997 0.26261 0.32513 1.34145 1.35608 1.42356 2.35586 2.44599 2.61267 3.26440 3.40645 3.51235 3.75392 3.81809 4.20149 4.29037 4.40159 4.42505 4.49390 4.58876 4.67922 4.73916 4.92556 4.98090 5.02490 5.24288 5.27928 5.35994 5.52703 5.65014 5.76403 6.19832 6.41819 6.91693 7.03907 7.79341 7.98656 9.16562 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.008735 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.540871 B = 3204.566074 C = 4219.691173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.342 6.342 3 C 0.114 3.886 4 C -0.190 4.190 5 C -0.095 4.095 6 C 0.067 3.933 7 O -0.499 6.499 8 C -0.074 4.074 9 C 0.214 3.786 10 H 0.064 0.936 11 C -0.146 4.146 12 N -0.753 5.753 13 C -0.228 4.228 14 H 0.064 0.936 15 C -0.058 4.058 16 N -0.980 5.980 17 Si 0.943 3.057 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.261 1.261 21 C -0.158 4.158 22 H 0.069 0.931 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.166 0.834 26 H 0.163 0.837 27 H 0.402 0.598 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.364 0.636 32 H 0.258 0.742 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.630 5.149 5.253 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.068 3.932 4 C -0.209 4.209 5 C -0.114 4.114 6 C 0.022 3.978 7 O -0.311 6.311 8 C -0.076 4.076 9 C 0.106 3.894 10 H 0.081 0.919 11 C -0.205 4.205 12 N -0.398 5.398 13 C -0.359 4.359 14 H 0.082 0.918 15 C -0.250 4.250 16 N -0.630 5.630 17 Si 0.771 3.229 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.186 1.186 21 C -0.178 4.178 22 H 0.087 0.913 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.183 0.817 26 H 0.181 0.819 27 H 0.260 0.740 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.199 0.801 32 H 0.067 0.933 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.381 4.980 5.784 22.702 hybrid contribution 0.137 -1.098 -0.709 1.315 sum -21.244 3.882 5.074 22.184 Atomic orbital electron populations 1.23395 0.76069 1.05614 1.02672 1.86088 1.23909 1.26860 1.88773 1.19036 0.91516 0.85447 0.97169 1.21371 1.01381 0.90622 1.07495 1.21451 0.92815 0.98952 0.98142 1.18179 0.90672 0.84160 1.04770 1.84809 1.80025 1.31297 1.34956 1.20343 0.96030 0.92782 0.98420 1.19128 0.87306 0.89100 0.93840 0.91857 1.22173 1.00579 1.01035 0.96749 1.43012 1.17881 1.08433 1.70502 1.19049 0.92642 0.96358 1.27802 0.91831 1.25371 0.97669 1.00890 1.01066 1.69857 1.18362 1.28727 1.46089 0.85597 0.78350 0.80352 0.78638 1.20374 1.21714 1.18564 1.20092 0.92399 0.97722 1.07538 0.91259 0.86648 0.91053 0.81711 0.81947 0.73993 0.93747 0.91246 0.93773 0.80061 0.93285 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -9.29 10.50 -93.29 -0.98 -10.27 16 3 C 0.11 3.31 6.69 22.49 0.15 3.46 16 4 C -0.19 -4.18 9.03 22.35 0.20 -3.98 16 5 C -0.10 -2.12 9.98 22.35 0.22 -1.90 16 6 C 0.07 1.91 6.68 22.49 0.15 2.06 16 7 O -0.50 -12.67 12.64 -93.39 -1.18 -13.85 16 8 C -0.07 -2.61 5.07 -19.78 -0.10 -2.71 16 9 C 0.21 8.74 2.82 44.24 0.12 8.87 16 10 H 0.06 2.62 7.63 -2.39 -0.02 2.60 16 11 C -0.15 -5.56 9.47 71.98 0.68 -4.88 16 12 N -0.75 -37.19 4.84 -326.49 -1.58 -38.77 16 13 C -0.23 -13.32 10.41 84.03 0.87 -12.44 16 14 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 15 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 16 N -0.98 -63.74 13.97 21.65 0.30 -63.43 16 17 Si 0.94 47.42 27.74 68.60 1.90 49.33 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 20 H -0.26 -12.25 6.52 99.48 0.65 -11.60 16 21 C -0.16 -5.65 9.17 22.36 0.21 -5.44 16 22 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 23 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.17 2.33 6.29 -2.91 -0.02 2.31 16 26 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.40 7.03 9.06 -74.06 -0.67 6.35 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.36 17.68 3.26 -92.71 -0.30 17.37 16 32 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.11 4.31 6.07 -2.91 -0.02 4.29 16 Total: -1.00 -73.46 279.69 2.66 -70.81 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.10 Total: 24.85 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.09 Total: -18.67 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -1.28 Total: -102.20 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -2.16 Total: -24.12 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.90 Total: 49.33 kcal Total: -73.46 2.66 -70.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182322215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.142 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds