Wall clock time and date at job start Sun Mar 29 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48501 * 109.47078 * 269.99220 * 3 2 1 5 5 H 1.48489 * 109.47275 * 29.99391 * 3 2 1 6 6 H 1.48504 * 109.47282 * 149.99977 * 3 2 1 7 7 C 1.37878 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00397 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47219 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46944 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99847 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99810 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.46699 * 180.02562 * 15 13 12 17 17 C 1.41385 * 126.58187 * 90.00677 * 16 15 13 18 18 C 1.34512 * 106.83926 * 180.25995 * 17 16 15 19 19 O 1.34305 * 108.42433 * 359.63135 * 18 17 16 20 20 C 1.34305 * 109.47225 * 0.37505 * 19 18 17 21 21 H 0.96993 * 119.99900 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47289 * 59.99738 * 9 7 2 23 23 H 1.08999 * 109.46549 * 300.00137 * 9 7 2 24 24 H 1.09005 * 109.47285 * 59.99878 * 10 9 7 25 25 H 1.09000 * 109.46949 * 299.99990 * 10 9 7 26 26 H 1.09005 * 109.46976 * 59.99831 * 11 10 9 27 27 H 1.08999 * 109.46751 * 299.99855 * 11 10 9 28 28 H 0.97003 * 120.00676 * 0.02562 * 12 11 10 29 29 H 1.09005 * 109.47178 * 60.00305 * 15 13 12 30 30 H 1.09000 * 109.47367 * 300.00226 * 15 13 12 31 31 H 1.08002 * 126.57514 * 359.97438 * 17 16 15 32 32 H 1.07998 * 125.78467 * 179.77218 * 18 17 16 33 33 H 1.08000 * 125.78555 * 179.79179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6366 0.0009 12 7 6.0398 -4.0177 0.0014 13 6 7.3650 -4.2641 0.0020 14 8 8.1531 -3.3422 0.0026 15 6 7.8672 -5.6849 0.0031 16 6 9.3742 -5.6848 0.0042 17 6 10.2160 -5.6844 1.1401 18 6 11.4824 -5.6787 0.6867 19 8 11.4525 -5.6839 -0.6560 20 6 10.1766 -5.6846 -1.0754 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8751 -0.6804 -0.8888 24 1 3.6585 -3.1502 -0.8893 25 1 3.6579 -3.1506 0.8907 26 1 5.9149 -2.1227 0.8910 27 1 5.9148 -2.1227 -0.8890 28 1 5.4095 -4.7551 0.0014 29 1 7.5042 -6.1993 -0.8867 30 1 7.5036 -6.1982 0.8933 31 1 9.9023 -5.6836 2.1736 32 1 12.3723 -5.6733 1.2986 33 1 9.8503 -5.6852 -2.1049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185318721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:33 Heat of formation + Delta-G solvation = -39.273922 kcal Electronic energy + Delta-G solvation = -15668.543754 eV Core-core repulsion = 12888.523746 eV Total energy + Delta-G solvation = -2780.020008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.66696 -39.46001 -35.58534 -34.06466 -33.30806 -31.55555 -30.48138 -28.37012 -26.66040 -22.96498 -21.74005 -21.07415 -20.58086 -19.72256 -17.65754 -17.01877 -16.68693 -15.88574 -15.59835 -15.51052 -14.78565 -14.37650 -14.15458 -13.41496 -13.12667 -12.91909 -12.77725 -12.54495 -12.06762 -11.92820 -11.61338 -11.08860 -10.89761 -10.22300 -10.01892 -9.91829 -9.76802 -9.47955 -9.23825 -8.85046 -8.65389 -8.56623 -6.07483 -4.06263 1.65046 2.41187 2.74973 3.01528 3.30590 3.38175 3.42649 3.48839 4.43559 4.58028 4.62982 4.83327 5.01455 5.22602 5.26691 5.31119 5.52474 5.59858 5.65131 5.85504 6.01020 6.01410 6.32179 6.37328 6.43796 6.69892 6.78928 6.97265 7.21733 7.35172 7.64735 7.75907 8.36150 8.49272 8.96301 9.54862 11.05799 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.063362 B = 0.003579 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.800704 B = 7820.964376 C = 8055.874046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.728 5.728 13 C 0.507 3.493 14 O -0.537 6.537 15 C -0.072 4.072 16 C -0.161 4.161 17 C -0.199 4.199 18 C -0.046 4.046 19 O -0.178 6.178 20 C -0.028 4.028 21 H 0.263 0.737 22 H 0.018 0.982 23 H 0.014 0.986 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.400 0.600 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.201 0.799 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.042 -14.062 0.245 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.380 5.380 13 C 0.292 3.708 14 O -0.414 6.414 15 C -0.112 4.112 16 C -0.163 4.163 17 C -0.218 4.218 18 C -0.114 4.114 19 O -0.074 6.074 20 C -0.096 4.096 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.233 0.767 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.164 0.836 32 H 0.217 0.783 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 19.701 -13.254 0.064 23.744 hybrid contribution -0.258 0.637 0.190 0.713 sum 19.443 -12.618 0.254 23.179 Atomic orbital electron populations 1.69909 1.06323 1.26979 1.51010 1.25029 0.94748 0.99249 0.94452 0.86774 0.80402 0.83515 0.78606 1.20229 1.21345 1.18909 1.21100 0.89317 0.94512 1.51105 0.91004 1.19505 0.97262 0.91523 0.96652 1.21703 0.90664 1.01015 1.01715 1.21634 0.96083 0.81306 1.01840 1.46182 1.06682 1.09942 1.75171 1.20575 0.82440 0.91212 0.76548 1.90712 1.55346 1.46331 1.48997 1.20015 0.91233 0.94930 1.05032 1.19814 0.95106 1.08188 0.93203 1.21681 0.92644 1.07658 0.99815 1.23935 0.99601 1.06970 0.80852 1.84052 1.29180 1.71354 1.22777 1.23785 0.80299 1.05901 0.99649 0.92679 0.96324 0.96764 0.92121 0.92096 0.91907 0.91891 0.76654 0.88101 0.87977 0.83641 0.78271 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 12 N -0.73 -9.63 5.56 -60.29 -0.33 -9.96 16 13 C 0.51 7.03 7.82 -10.98 -0.09 6.94 16 14 O -0.54 -9.91 16.03 5.56 0.09 -9.82 16 15 C -0.07 -0.69 6.22 -29.03 -0.18 -0.87 16 16 C -0.16 -1.81 4.66 -104.74 -0.49 -2.30 16 17 C -0.20 -2.13 10.87 -39.70 -0.43 -2.57 16 18 C -0.05 -0.45 12.09 29.42 0.36 -0.09 16 19 O -0.18 -1.99 10.65 5.70 0.06 -1.92 16 20 C -0.03 -0.30 12.01 29.42 0.35 0.05 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 23 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -34.78 290.76 -5.39 -40.16 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -4.50 Total: -0.17 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.18 Total: -12.78 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.44 Total: -36.95 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.15 Total: -11.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.78 -5.39 -40.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185318721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.888 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds