Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48501 * 109.47078 * 269.99220 * 3 2 1 5 5 H 1.48489 * 109.47275 * 29.99391 * 3 2 1 6 6 H 1.48504 * 109.47282 * 149.99977 * 3 2 1 7 7 C 1.37878 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99863 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00397 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47219 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.46944 * 179.97438 * 11 10 9 13 13 C 1.34785 * 119.99847 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99810 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.46699 * 180.02562 * 15 13 12 17 17 C 1.41385 * 126.58187 * 90.00677 * 16 15 13 18 18 C 1.34512 * 106.83926 * 180.25995 * 17 16 15 19 19 O 1.34305 * 108.42433 * 359.63135 * 18 17 16 20 20 C 1.34305 * 109.47225 * 0.37505 * 19 18 17 21 21 H 0.96993 * 119.99900 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47289 * 59.99738 * 9 7 2 23 23 H 1.08999 * 109.46549 * 300.00137 * 9 7 2 24 24 H 1.09005 * 109.47285 * 59.99878 * 10 9 7 25 25 H 1.09000 * 109.46949 * 299.99990 * 10 9 7 26 26 H 1.09005 * 109.46976 * 59.99831 * 11 10 9 27 27 H 1.08999 * 109.46751 * 299.99855 * 11 10 9 28 28 H 0.97003 * 120.00676 * 0.02562 * 12 11 10 29 29 H 1.09005 * 109.47178 * 60.00305 * 15 13 12 30 30 H 1.09000 * 109.47367 * 300.00226 * 15 13 12 31 31 H 1.08002 * 126.57514 * 359.97438 * 17 16 15 32 32 H 1.07998 * 125.78467 * 179.77218 * 18 17 16 33 33 H 1.08000 * 125.78555 * 179.79179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6366 0.0009 12 7 6.0398 -4.0177 0.0014 13 6 7.3650 -4.2641 0.0020 14 8 8.1531 -3.3422 0.0026 15 6 7.8672 -5.6849 0.0031 16 6 9.3742 -5.6848 0.0042 17 6 10.2160 -5.6844 1.1401 18 6 11.4824 -5.6787 0.6867 19 8 11.4525 -5.6839 -0.6560 20 6 10.1766 -5.6846 -1.0754 21 1 -0.4849 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8751 -0.6804 -0.8888 24 1 3.6585 -3.1502 -0.8893 25 1 3.6579 -3.1506 0.8907 26 1 5.9149 -2.1227 0.8910 27 1 5.9148 -2.1227 -0.8890 28 1 5.4095 -4.7551 0.0014 29 1 7.5042 -6.1993 -0.8867 30 1 7.5036 -6.1982 0.8933 31 1 9.9023 -5.6836 2.1736 32 1 12.3723 -5.6733 1.2986 33 1 9.8503 -5.6852 -2.1049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185318721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = -63.900142 kcal Electronic energy + Delta-G solvation = -15669.611627 eV Core-core repulsion = 12888.523746 eV Total energy + Delta-G solvation = -2781.087881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.41515 -40.59339 -37.01607 -35.13134 -34.89865 -33.30507 -31.33255 -29.54528 -28.06037 -24.62857 -22.47761 -22.24568 -21.96214 -20.79543 -19.00226 -18.38576 -17.91782 -16.83238 -16.78064 -16.66265 -16.15528 -15.68538 -15.44872 -14.78831 -14.57618 -14.14052 -13.82012 -13.65766 -13.52496 -13.33160 -12.74203 -12.70414 -12.38819 -11.91849 -11.78138 -11.59516 -11.33482 -11.04578 -10.76841 -10.49587 -10.05359 -9.40288 -8.30111 -6.33913 0.90350 1.36206 1.37974 1.49667 1.61439 1.69597 2.32587 2.35733 2.46002 3.05719 3.80949 3.97766 4.04031 4.14077 4.20558 4.24430 4.50883 4.58433 4.66173 4.81161 4.88847 4.94230 5.04079 5.13490 5.32637 5.41502 5.52504 5.55648 5.61476 5.64879 6.22482 6.26970 6.63911 6.74556 7.31021 7.32658 8.86367 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.063362 B = 0.003579 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.800704 B = 7820.964376 C = 8055.874046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.718 5.718 13 C 0.506 3.494 14 O -0.587 6.587 15 C -0.062 4.062 16 C -0.183 4.183 17 C -0.224 4.224 18 C -0.048 4.048 19 O -0.192 6.192 20 C -0.041 4.041 21 H 0.266 0.734 22 H 0.019 0.981 23 H 0.018 0.982 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.417 0.583 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.233 0.767 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.634 -14.602 0.214 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.371 5.371 13 C 0.294 3.706 14 O -0.467 6.467 15 C -0.101 4.101 16 C -0.185 4.185 17 C -0.243 4.243 18 C -0.114 4.114 19 O -0.088 6.088 20 C -0.108 4.108 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.254 0.746 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.249 0.751 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 21.284 -13.843 0.033 25.390 hybrid contribution -0.784 0.727 0.213 1.090 sum 20.500 -13.116 0.246 24.338 Atomic orbital electron populations 1.70052 1.08201 1.28150 1.52719 1.25976 0.95581 1.03409 0.94237 0.85706 0.79466 0.78593 0.79195 1.19214 1.20973 1.17301 1.21474 0.91889 0.93294 1.50199 0.94296 1.19475 0.94095 0.94853 0.96689 1.21477 0.92021 0.97991 1.02264 1.21251 0.94338 0.83165 1.00992 1.46010 1.07203 1.09112 1.74745 1.21318 0.81800 0.92534 0.74932 1.90693 1.56491 1.48241 1.51269 1.20057 0.90310 0.92051 1.07694 1.20152 0.96077 1.08686 0.93583 1.22003 0.93312 1.08543 1.00424 1.24620 1.00667 1.05600 0.80552 1.84053 1.29644 1.71513 1.23580 1.24323 0.80141 1.05570 1.00783 0.92483 0.96270 0.96317 0.91529 0.91648 0.92967 0.92713 0.74641 0.84944 0.85596 0.82762 0.75123 0.76186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 2 C 0.00 0.28 5.47 84.66 0.46 0.75 16 3 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 11 C 0.13 3.98 5.67 86.38 0.49 4.47 16 12 N -0.72 -17.37 5.56 -463.05 -2.57 -19.94 16 13 C 0.51 13.03 7.82 87.66 0.69 13.72 16 14 O -0.59 -21.10 16.03 -3.03 -0.05 -21.15 16 15 C -0.06 -1.01 6.22 29.10 0.18 -0.83 16 16 C -0.18 -3.78 4.66 -19.94 -0.09 -3.87 16 17 C -0.22 -4.49 10.87 22.19 0.24 -4.25 16 18 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 19 O -0.19 -4.04 10.65 -2.52 -0.03 -4.07 16 20 C -0.04 -0.80 12.01 66.97 0.80 0.00 16 21 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 22 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 23 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 24 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.42 7.26 8.47 -92.71 -0.79 6.48 16 29 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.23 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.22 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -75.83 290.76 3.91 -71.92 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.26 Total: 9.66 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.11 Total: -23.71 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.27 Total: -78.99 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.08 Total: -25.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -75.83 3.91 -71.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185318721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.017 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds