Wall clock time and date at job start Sun Mar 29 2020 22:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39795 * 126.51952 * 2 1 4 4 C 1.35486 * 107.84635 * 179.75872 * 3 2 1 5 5 N 1.34962 * 108.98391 * 0.38697 * 4 3 2 6 6 C 1.46499 * 125.63608 * 179.86527 * 5 4 3 7 7 C 1.37697 * 108.72852 * 359.60790 * 5 4 3 8 8 C 1.46489 * 126.26636 * 180.21349 * 7 5 4 9 9 O 1.21616 * 120.00582 * 179.97438 * 8 7 5 10 10 O 1.34900 * 119.99809 * 0.02562 * 8 7 5 11 11 C 1.45200 * 116.99990 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47085 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47211 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99982 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99985 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99771 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99889 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46893 * 120.00054 * 17 15 13 20 20 H 1.48497 * 109.47143 * 240.00163 * 17 15 13 21 21 H 1.08994 * 109.47411 * 270.00363 * 1 2 3 22 22 H 1.09001 * 109.46585 * 30.00966 * 1 2 3 23 23 H 1.09004 * 109.47256 * 150.00262 * 1 2 3 24 24 H 1.08005 * 126.07738 * 359.95837 * 3 2 1 25 25 H 1.08000 * 125.51092 * 180.26611 * 4 3 2 26 26 H 1.09002 * 109.47391 * 269.69740 * 6 5 4 27 27 H 1.09001 * 109.46813 * 149.69796 * 6 5 4 28 28 H 1.09004 * 109.47041 * 29.69923 * 6 5 4 29 29 H 1.08997 * 109.47057 * 300.00188 * 11 10 8 30 30 H 1.08995 * 109.46984 * 59.99960 * 11 10 8 31 31 H 1.09001 * 109.47317 * 300.00597 * 12 11 10 32 32 H 1.09010 * 109.46574 * 59.99981 * 12 11 10 33 33 H 0.96998 * 119.99676 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6224 0.6897 0.0054 5 7 3.6298 -0.6599 0.0002 6 6 4.8250 -1.5070 0.0008 7 6 2.3281 -1.1091 0.0002 8 6 1.8943 -2.5083 -0.0003 9 8 0.7083 -2.7773 0.0002 10 8 2.8105 -3.4985 -0.0001 11 6 2.3085 -4.8610 0.0000 12 6 3.4858 -5.8382 -0.0005 13 6 2.9649 -7.2522 -0.0010 14 1 1.9006 -7.4356 -0.0006 15 6 3.8471 -8.3119 -0.0010 16 7 5.1431 -8.0885 -0.0011 17 14 3.2014 -10.0648 -0.0009 18 1 1.7165 -10.0452 -0.0002 19 1 3.6871 -10.7713 -1.2134 20 1 3.6871 -10.7712 1.2116 21 1 -0.3634 0.0001 1.0276 22 1 -0.3632 0.8899 -0.5140 23 1 -0.3634 -0.8900 -0.5138 24 1 2.0158 2.1541 -0.0006 25 1 4.4982 1.3217 0.0109 26 1 5.1217 -1.7175 -1.0268 27 1 4.6067 -2.4430 0.5150 28 1 5.6360 -0.9907 0.5145 29 1 1.7008 -5.0242 0.8899 30 1 1.7008 -5.0243 -0.8899 31 1 4.0933 -5.6748 -0.8907 32 1 4.0939 -5.6748 0.8893 33 1 5.7637 -8.8340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188901747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:02 Heat of formation + Delta-G solvation = -71.671825 kcal Electronic energy + Delta-G solvation = -16396.701491 eV Core-core repulsion = 13615.276604 eV Total energy + Delta-G solvation = -2781.424887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50168 -40.85556 -37.72005 -35.49660 -34.55650 -32.47007 -31.22189 -29.40561 -27.16613 -26.16369 -24.18796 -22.81208 -21.40191 -20.38502 -18.94840 -18.28376 -17.65424 -17.57506 -16.64489 -16.24173 -16.18044 -14.98054 -14.85849 -14.57013 -14.35256 -14.13238 -13.91148 -13.64241 -13.19432 -13.11694 -12.86331 -12.75047 -12.67042 -12.62444 -12.57289 -11.88379 -11.53207 -11.52139 -11.34979 -10.64051 -9.52854 -9.26873 -8.29899 -6.42659 0.19296 1.39719 1.40106 1.53204 1.65614 1.73243 1.92380 2.06983 2.38733 3.04858 3.68376 3.93641 4.14859 4.17916 4.21038 4.30148 4.38124 4.41137 4.63815 4.81721 4.85577 4.86149 5.00431 5.14788 5.15418 5.38915 5.42704 5.53906 5.69411 5.77610 5.94430 6.04533 6.32178 6.68591 6.72866 7.27206 8.82845 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044906 B = 0.004962 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.370636 B = 5641.769788 C = 6234.088889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.077 4.077 3 C -0.224 4.224 4 C 0.052 3.948 5 N -0.421 5.421 6 C 0.060 3.940 7 C -0.096 4.096 8 C 0.523 3.477 9 O -0.535 6.535 10 O -0.362 6.362 11 C 0.091 3.909 12 C 0.035 3.965 13 C -0.552 4.552 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.274 1.274 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.176 0.824 25 H 0.217 0.783 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 18.607 0.096 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.247 4.247 4 C -0.085 4.085 5 N -0.095 5.095 6 C -0.080 4.080 7 C -0.205 4.205 8 C 0.371 3.629 9 O -0.427 6.427 10 O -0.280 6.280 11 C 0.018 3.982 12 C -0.002 4.002 13 C -0.589 4.589 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.200 1.200 21 H 0.089 0.911 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.193 0.807 25 H 0.234 0.766 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.006 18.093 0.092 18.122 hybrid contribution -0.180 -1.365 -0.016 1.377 sum -1.187 16.729 0.077 16.771 Atomic orbital electron populations 1.20372 0.88836 1.02965 1.02507 1.20371 0.96495 0.91066 1.00647 1.21136 0.91412 0.99167 1.12954 1.22765 1.01102 0.81894 1.02765 1.44132 1.05281 1.07599 1.52453 1.22464 0.85187 0.95576 1.04780 1.19313 0.85929 0.89440 1.25781 1.20373 0.84109 0.85662 0.72719 1.90790 1.18491 1.84552 1.48852 1.86617 1.39961 1.17483 1.83902 1.23180 0.98361 0.75831 1.00820 1.18953 0.92542 0.91953 0.96721 1.21392 0.93723 0.91236 1.52576 0.91921 1.25921 0.94938 1.04172 0.93976 1.70083 1.02603 1.33348 1.50360 0.85288 0.78833 0.78170 0.78095 1.18814 1.19953 1.19956 0.91078 0.89036 0.92840 0.80680 0.76619 0.89855 0.90625 0.85737 0.92436 0.92470 0.97371 0.97349 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.28 9.83 71.23 0.70 -1.58 16 2 C -0.08 -2.14 6.22 -19.54 -0.12 -2.26 16 3 C -0.22 -4.47 10.76 22.01 0.24 -4.23 16 4 C 0.05 0.94 11.34 83.58 0.95 1.89 16 5 N -0.42 -10.74 3.15 -534.84 -1.68 -12.42 16 6 C 0.06 1.35 10.56 127.77 1.35 2.70 16 7 C -0.10 -3.15 6.89 40.32 0.28 -2.87 16 8 C 0.52 21.03 7.92 69.97 0.55 21.59 16 9 O -0.54 -23.50 14.61 19.46 0.28 -23.22 16 10 O -0.36 -15.37 7.65 -58.15 -0.45 -15.81 16 11 C 0.09 4.26 5.42 71.98 0.39 4.65 16 12 C 0.04 1.91 5.35 29.85 0.16 2.07 16 13 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 15 C 0.01 0.52 5.46 84.66 0.46 0.98 16 16 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 17 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.64 6.50 -2.39 -0.02 1.62 16 24 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 25 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 2.20 6.15 -2.39 -0.01 2.19 16 28 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.25 288.35 6.75 -63.49 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.10 Total: 5.14 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.19 Total: -8.34 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.40 Total: -66.97 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.16 Total: -39.03 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.25 6.75 -63.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188901747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.178 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds