Wall clock time and date at job start Sun Mar 29 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34511 * 125.78892 * 2 1 4 4 C 1.41379 * 106.84238 * 179.75206 * 3 2 1 5 5 C 1.34514 * 106.83836 * 0.37016 * 4 3 2 6 6 C 1.50704 * 125.78924 * 179.88822 * 5 4 3 7 7 N 1.46903 * 109.47018 * 89.72087 * 6 5 4 8 8 C 1.47957 * 111.00079 * 170.00106 * 7 6 5 9 9 C 1.53937 * 86.18208 * 222.41605 * 8 7 6 10 10 O 1.42896 * 113.73148 * 269.25755 * 9 8 7 11 11 C 1.50694 * 113.73443 * 138.07827 * 9 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.47958 * 111.00224 * 70.63784 * 7 6 5 20 20 O 1.34298 * 125.78893 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47081 * 299.99804 * 1 2 3 23 23 H 1.08995 * 109.47019 * 60.00153 * 1 2 3 24 24 H 1.08005 * 126.57777 * 0.02562 * 3 2 1 25 25 H 1.08000 * 126.58152 * 180.24040 * 4 3 2 26 26 H 1.08997 * 109.47128 * 329.72132 * 6 5 4 27 27 H 1.08999 * 109.47288 * 209.71389 * 6 5 4 28 28 H 1.08999 * 113.76060 * 108.09601 * 8 7 6 29 29 H 1.09001 * 113.85944 * 336.74419 * 8 7 6 30 30 H 0.96709 * 114.00030 * 178.09403 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09003 * 113.76031 * 23.26533 * 19 7 6 33 33 H 1.08999 * 113.76380 * 251.90073 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5814 -0.7121 0.0008 6 6 4.7706 -1.6378 0.0017 7 7 5.1561 -1.9383 1.3871 8 6 6.1603 -3.0239 1.4345 9 6 5.3534 -3.5787 2.6222 10 8 5.7900 -3.0903 3.8922 11 6 5.1855 -5.0760 2.5949 12 1 5.6154 -5.6530 1.7895 13 6 4.4830 -5.7094 3.5981 14 7 3.9600 -5.0068 4.5792 15 14 4.2743 -7.5654 3.5638 16 1 3.4862 -7.9968 4.7462 17 1 3.5617 -7.9605 2.3224 18 1 5.6096 -8.2143 3.5960 19 6 4.1540 -2.8099 2.0392 20 8 2.2924 -1.0894 0.0005 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9665 2.1204 0.0004 25 1 4.5212 1.2434 0.0111 26 1 5.6043 -1.1588 -0.5116 27 1 4.5110 -2.5634 -0.5120 28 1 7.1609 -2.6852 1.7032 29 1 6.1518 -3.6710 0.5573 30 1 5.2672 -3.4136 4.6389 31 1 3.4655 -5.4524 5.2848 32 1 3.5570 -3.3935 1.3383 33 1 3.5515 -2.3003 2.7911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190038049.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:14 Heat of formation + Delta-G solvation = -0.675723 kcal Electronic energy + Delta-G solvation = -16875.987103 eV Core-core repulsion = 14097.640839 eV Total energy + Delta-G solvation = -2778.346265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.27963 -38.93147 -34.46116 -32.89604 -32.17824 -31.98675 -29.39959 -26.58279 -25.12850 -24.61150 -22.12479 -21.34274 -19.82358 -18.59400 -17.32237 -16.24126 -15.96701 -15.10360 -14.87958 -14.40699 -14.22118 -13.91712 -13.17587 -12.96806 -12.92256 -12.52733 -12.27566 -11.99980 -11.86905 -11.66947 -11.36717 -10.99848 -10.78302 -10.70667 -10.38958 -10.04170 -9.59201 -9.35828 -8.64996 -8.30645 -7.93101 -7.82762 -6.25382 -4.35517 1.98947 2.88288 3.18672 3.21578 3.26879 3.29242 4.26036 4.80716 4.88779 5.02175 5.12616 5.29977 5.34888 5.46262 5.65704 5.67894 5.78502 5.92951 6.01746 6.07457 6.26181 6.30381 6.39791 6.45989 6.66771 6.81650 7.05868 7.12982 7.34797 7.50050 7.76697 7.90856 8.00189 8.65721 9.34344 9.65880 10.80585 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.006590 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.681603 B = 4248.149232 C = 4696.227914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 C -0.214 4.214 4 C -0.202 4.202 5 C 0.011 3.989 6 C 0.095 3.905 7 N -0.475 5.475 8 C 0.008 3.992 9 C 0.245 3.755 10 O -0.572 6.572 11 C -0.539 4.539 12 H 0.065 0.935 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.904 3.096 16 H -0.284 1.284 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.009 4.009 20 O -0.171 6.171 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.389 0.611 31 H 0.272 0.728 32 H 0.061 0.939 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 7.468 -8.377 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.233 4.233 4 C -0.222 4.222 5 C -0.040 4.040 6 C -0.033 4.033 7 N -0.199 5.199 8 C -0.120 4.120 9 C 0.204 3.796 10 O -0.384 6.384 11 C -0.577 4.577 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.210 1.210 17 H -0.201 1.201 18 H -0.199 1.199 19 C -0.138 4.138 20 O -0.068 6.068 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.161 0.839 25 H 0.163 0.837 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.244 0.756 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.991 8.097 -8.302 12.264 hybrid contribution -0.818 -1.676 -0.118 1.869 sum -4.809 6.421 -8.420 11.630 Atomic orbital electron populations 1.20245 0.85572 1.03854 1.03055 1.22350 0.93901 0.84436 1.06837 1.21470 0.92900 0.99002 1.09977 1.21454 0.97829 0.93838 1.09097 1.22328 0.82609 0.94615 1.04440 1.21157 0.90861 0.96411 0.94849 1.68747 1.08328 1.32481 1.10299 1.24183 0.97344 0.91395 0.99057 1.19722 0.87459 0.90615 0.81824 1.86034 1.60922 1.74239 1.17178 1.21607 1.34528 0.92080 1.09466 0.91655 1.25063 0.94007 0.99183 0.94840 1.69344 1.35939 1.36196 1.12314 0.86460 0.78401 0.84367 0.77656 1.20991 1.20079 1.19913 1.24712 0.97163 0.93876 0.98081 1.83994 1.16586 1.34960 1.71229 0.90710 0.89936 0.90130 0.83948 0.83743 0.88567 0.92967 0.90303 0.91458 0.75577 0.91811 0.92099 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.01 0.38 -0.38 16 2 C -0.02 -0.38 7.32 -35.62 -0.26 -0.64 16 3 C -0.21 -3.18 10.81 -39.70 -0.43 -3.61 16 4 C -0.20 -3.31 10.81 -39.70 -0.43 -3.74 16 5 C 0.01 0.19 6.35 -35.62 -0.23 -0.03 16 6 C 0.10 1.71 5.36 -4.97 -0.03 1.68 16 7 N -0.48 -10.27 6.25 -239.69 -1.50 -11.77 16 8 C 0.01 0.18 7.36 -2.77 -0.02 0.16 16 9 C 0.25 6.33 1.44 -90.84 -0.13 6.20 16 10 O -0.57 -15.79 13.48 -35.23 -0.47 -16.27 16 11 C -0.54 -14.51 8.62 -34.44 -0.30 -14.81 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 14 N -0.90 -24.44 11.09 55.43 0.61 -23.82 16 15 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 19 C -0.01 -0.22 6.86 -2.77 -0.02 -0.24 16 20 O -0.17 -3.17 10.65 5.72 0.06 -3.11 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 25 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.05 0.92 7.69 -51.93 -0.40 0.52 16 28 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 30 H 0.39 10.91 6.46 45.56 0.29 11.20 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.06 1.48 7.73 -51.93 -0.40 1.08 16 33 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -29.56 283.79 -7.44 -37.00 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.84 Total: 11.78 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.56 Total: -13.61 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.88 Total: -35.59 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.41 Total: -19.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.56 -7.44 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190038049.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.323 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds