Wall clock time and date at job start Sun Mar 29 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34511 * 125.78892 * 2 1 4 4 C 1.41379 * 106.84238 * 179.75206 * 3 2 1 5 5 C 1.34514 * 106.83836 * 0.37016 * 4 3 2 6 6 C 1.50704 * 125.78924 * 179.88822 * 5 4 3 7 7 N 1.46903 * 109.47018 * 89.72087 * 6 5 4 8 8 C 1.47957 * 111.00079 * 170.00106 * 7 6 5 9 9 C 1.53937 * 86.18208 * 222.41605 * 8 7 6 10 10 O 1.42896 * 113.73148 * 269.25755 * 9 8 7 11 11 C 1.50694 * 113.73443 * 138.07827 * 9 8 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.47958 * 111.00224 * 70.63784 * 7 6 5 20 20 O 1.34298 * 125.78893 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47081 * 299.99804 * 1 2 3 23 23 H 1.08995 * 109.47019 * 60.00153 * 1 2 3 24 24 H 1.08005 * 126.57777 * 0.02562 * 3 2 1 25 25 H 1.08000 * 126.58152 * 180.24040 * 4 3 2 26 26 H 1.08997 * 109.47128 * 329.72132 * 6 5 4 27 27 H 1.08999 * 109.47288 * 209.71389 * 6 5 4 28 28 H 1.08999 * 113.76060 * 108.09601 * 8 7 6 29 29 H 1.09001 * 113.85944 * 336.74419 * 8 7 6 30 30 H 0.96709 * 114.00030 * 178.09403 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09003 * 113.76031 * 23.26533 * 19 7 6 33 33 H 1.08999 * 113.76380 * 251.90073 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5814 -0.7121 0.0008 6 6 4.7706 -1.6378 0.0017 7 7 5.1561 -1.9383 1.3871 8 6 6.1603 -3.0239 1.4345 9 6 5.3534 -3.5787 2.6222 10 8 5.7900 -3.0903 3.8922 11 6 5.1855 -5.0760 2.5949 12 1 5.6154 -5.6530 1.7895 13 6 4.4830 -5.7094 3.5981 14 7 3.9600 -5.0068 4.5792 15 14 4.2743 -7.5654 3.5638 16 1 3.4862 -7.9968 4.7462 17 1 3.5617 -7.9605 2.3224 18 1 5.6096 -8.2143 3.5960 19 6 4.1540 -2.8099 2.0392 20 8 2.2924 -1.0894 0.0005 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9665 2.1204 0.0004 25 1 4.5212 1.2434 0.0111 26 1 5.6043 -1.1588 -0.5116 27 1 4.5110 -2.5634 -0.5120 28 1 7.1609 -2.6852 1.7032 29 1 6.1518 -3.6710 0.5573 30 1 5.2672 -3.4136 4.6389 31 1 3.4655 -5.4524 5.2848 32 1 3.5570 -3.3935 1.3383 33 1 3.5515 -2.3003 2.7911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190038049.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:13 Heat of formation + Delta-G solvation = -22.823377 kcal Electronic energy + Delta-G solvation = -16876.947498 eV Core-core repulsion = 14097.640839 eV Total energy + Delta-G solvation = -2779.306659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.52779 -40.74465 -36.38944 -34.13952 -34.10128 -33.39348 -30.80941 -28.33110 -26.96402 -26.11630 -23.69479 -22.62506 -21.08067 -20.51445 -19.29987 -17.57663 -17.38669 -17.07803 -16.61051 -16.03385 -15.74192 -15.54561 -14.70408 -14.18145 -13.95097 -13.83643 -13.71254 -13.68257 -13.47463 -13.28307 -12.86436 -12.72261 -12.58932 -12.34765 -12.23403 -12.03277 -11.27055 -10.80797 -10.65772 -10.20625 -9.68518 -9.18235 -8.26223 -6.44758 0.74226 1.41961 1.43243 1.51638 1.67802 2.01682 2.36152 2.94117 3.16203 3.64675 3.93781 4.02857 4.13586 4.18279 4.30333 4.33143 4.44514 4.55083 4.62100 4.71305 4.85115 4.85924 4.90279 5.07459 5.10674 5.26885 5.35014 5.39131 5.68723 5.72469 5.95105 6.16958 6.28320 6.60699 7.28260 7.49759 8.78741 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.006590 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.681603 B = 4248.149232 C = 4696.227914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.033 4.033 3 C -0.222 4.222 4 C -0.199 4.199 5 C -0.028 4.028 6 C 0.098 3.902 7 N -0.479 5.479 8 C 0.020 3.980 9 C 0.218 3.782 10 O -0.584 6.584 11 C -0.562 4.562 12 H 0.068 0.932 13 C 0.025 3.975 14 N -0.921 5.921 15 Si 0.970 3.030 16 H -0.280 1.280 17 H -0.270 1.270 18 H -0.269 1.269 19 C 0.005 3.995 20 O -0.200 6.200 21 H 0.071 0.929 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.173 0.827 25 H 0.161 0.839 26 H 0.126 0.874 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.382 0.618 31 H 0.274 0.726 32 H 0.053 0.947 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 7.845 -9.515 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.241 4.241 4 C -0.219 4.219 5 C -0.077 4.077 6 C -0.030 4.030 7 N -0.202 5.202 8 C -0.108 4.108 9 C 0.177 3.823 10 O -0.395 6.395 11 C -0.600 4.600 12 H 0.087 0.913 13 C -0.175 4.175 14 N -0.562 5.562 15 Si 0.794 3.206 16 H -0.206 1.206 17 H -0.195 1.195 18 H -0.194 1.194 19 C -0.124 4.124 20 O -0.098 6.098 21 H 0.090 0.910 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.191 0.809 25 H 0.179 0.821 26 H 0.144 0.856 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.236 0.764 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.378 8.489 -9.456 13.440 hybrid contribution -0.738 -1.701 0.218 1.867 sum -5.116 6.788 -9.237 12.553 Atomic orbital electron populations 1.20472 0.82583 1.04419 1.05208 1.23311 0.95739 0.83920 1.05356 1.21868 0.92124 1.00411 1.09666 1.21821 0.99291 0.93419 1.07370 1.22416 0.82672 0.95365 1.07288 1.21204 0.92247 0.96948 0.92577 1.68629 1.07062 1.31515 1.12990 1.24121 0.97273 0.91471 0.97915 1.20130 0.89429 0.90723 0.82044 1.86016 1.61146 1.74502 1.17876 1.21907 1.35057 0.92995 1.09992 0.91349 1.25869 0.93566 1.03636 0.94439 1.69434 1.36186 1.37814 1.12741 0.85434 0.78451 0.78927 0.77782 1.20564 1.19516 1.19381 1.24363 0.96661 0.93871 0.97528 1.83972 1.17165 1.36693 1.71950 0.90967 0.88302 0.87258 0.80905 0.82125 0.85634 0.92962 0.89618 0.89590 0.76364 0.91630 0.92889 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.42 71.24 0.74 -0.62 16 2 C -0.03 -0.98 7.32 24.83 0.18 -0.80 16 3 C -0.22 -6.12 10.81 22.19 0.24 -5.88 16 4 C -0.20 -6.21 10.81 22.19 0.24 -5.97 16 5 C -0.03 -0.99 6.35 24.83 0.16 -0.83 16 6 C 0.10 3.42 5.36 85.56 0.46 3.88 16 7 N -0.48 -20.54 6.25 -915.44 -5.72 -26.26 16 8 C 0.02 0.87 7.36 86.41 0.64 1.51 16 9 C 0.22 11.36 1.44 -10.89 -0.02 11.35 16 10 O -0.58 -32.96 13.48 -148.98 -2.01 -34.97 16 11 C -0.56 -30.40 8.62 25.60 0.22 -30.17 16 12 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 13 C 0.02 1.31 5.40 84.66 0.46 1.77 16 14 N -0.92 -50.88 11.09 21.45 0.24 -50.64 16 15 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 C 0.01 0.27 6.86 86.41 0.59 0.86 16 20 O -0.20 -7.39 10.65 -2.46 -0.03 -7.42 16 21 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 25 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 26 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.05 1.81 7.69 -2.39 -0.02 1.80 16 28 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 29 H 0.09 3.34 7.75 -2.39 -0.02 3.32 16 30 H 0.38 22.13 6.46 -74.05 -0.48 21.66 16 31 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.05 2.65 7.73 -2.39 -0.02 2.64 16 33 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -63.66 283.79 -0.95 -64.61 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.63 Total: 35.59 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.91 Total: -24.91 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -5.49 Total: -76.90 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -2.03 Total: -42.39 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -63.66 -0.95 -64.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190038049.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.785 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds