Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33400 * 120.00384 * 2 1 4 4 C 1.46341 * 120.00352 * 180.02562 * 3 2 1 5 5 C 1.35173 * 120.00190 * 180.02562 * 4 3 2 6 6 C 1.46263 * 119.99777 * 180.02562 * 5 4 3 7 7 O 1.21720 * 120.00502 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.47576 * 134.49390 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.11846 * 155.36116 * 9 8 6 11 11 O 1.42894 * 113.74258 * 269.15648 * 10 9 8 12 12 C 1.50696 * 113.73834 * 137.95019 * 10 9 8 13 13 H 1.07999 * 120.00319 * 1.93267 * 12 10 9 14 14 C 1.37885 * 119.99717 * 181.92651 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47805 * 134.45494 * 359.86935 * 8 6 5 21 21 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47044 * 299.99701 * 1 2 3 23 23 H 1.09003 * 109.47128 * 59.99299 * 1 2 3 24 24 H 1.08004 * 119.99654 * 180.02562 * 2 1 3 25 25 H 1.08003 * 120.00380 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.99686 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.00124 * 359.97438 * 5 4 3 28 28 H 1.08999 * 113.76805 * 41.06190 * 9 8 6 29 29 H 1.09000 * 113.87378 * 269.67731 * 9 8 6 30 30 H 0.96701 * 113.99575 * 178.07128 * 11 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.09008 * 113.77106 * 90.37414 * 20 8 6 33 33 H 1.08997 * 113.84172 * 318.91386 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1552 0.0000 4 6 3.6375 1.1552 -0.0006 5 6 4.3134 2.3258 0.0000 6 6 5.7760 2.3257 -0.0012 7 8 6.3847 1.2716 -0.0021 8 7 6.4500 3.4930 -0.0012 9 6 7.8788 3.8622 -0.0016 10 6 7.4284 5.1880 -0.6415 11 8 7.4143 5.1618 -2.0701 12 6 8.1285 6.3999 -0.0829 13 1 8.8917 6.2825 0.6721 14 6 7.7947 7.6587 -0.5360 15 7 8.4061 8.7164 -0.0489 16 14 6.4743 7.8617 -1.8416 17 1 7.0981 7.8136 -3.1883 18 1 5.4815 6.7644 -1.7164 19 1 5.7934 9.1686 -1.6578 20 6 6.0540 4.9170 -0.0026 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 2.0470 -0.9354 -0.0004 25 1 1.6342 2.0906 0.0004 26 1 4.1775 0.2199 -0.0014 27 1 3.7734 3.2612 0.0004 28 1 8.4921 3.2441 -0.6573 29 1 8.3049 3.9778 0.9949 30 1 7.1038 5.9830 -2.4755 31 1 8.1715 9.6019 -0.3679 32 1 5.9413 5.3427 0.9945 33 1 5.2128 5.1396 -0.6590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193975699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = -8.574133 kcal Electronic energy + Delta-G solvation = -16235.255873 eV Core-core repulsion = 13456.567108 eV Total energy + Delta-G solvation = -2778.688766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73034 -37.76053 -35.81508 -34.43787 -32.56099 -32.27370 -29.18915 -27.30272 -25.66450 -25.25397 -21.99809 -19.97340 -19.65112 -18.34732 -17.45715 -16.73872 -16.31979 -15.41557 -14.83889 -14.79797 -13.84413 -13.61200 -13.59381 -13.48744 -13.12400 -12.68990 -12.38007 -12.20651 -12.14736 -11.87622 -11.41432 -11.23510 -10.93037 -10.82308 -10.62243 -10.14397 -9.78405 -9.32773 -9.02338 -8.70158 -8.42911 -7.95820 -6.43394 -4.49683 0.83013 2.61470 2.98255 3.00656 3.13147 3.43285 3.78141 4.01928 4.56435 4.68107 4.83051 5.03474 5.06552 5.22735 5.33287 5.33712 5.51973 5.58518 5.66806 6.00509 6.05362 6.06781 6.21777 6.30880 6.35314 6.38253 6.60413 6.64082 6.71207 7.19345 8.02131 8.29495 8.50623 8.60568 8.65139 9.14053 10.68818 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033963 B = 0.005417 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.234587 B = 5167.624166 C = 5676.342954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C -0.144 4.144 4 C -0.053 4.053 5 C -0.188 4.188 6 C 0.558 3.442 7 O -0.566 6.566 8 N -0.628 5.628 9 C 0.127 3.873 10 C 0.194 3.806 11 O -0.553 6.553 12 C -0.537 4.537 13 H 0.091 0.909 14 C 0.080 3.920 15 N -0.876 5.876 16 Si 0.858 3.142 17 H -0.267 1.267 18 H -0.255 1.255 19 H -0.283 1.283 20 C 0.063 3.937 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.352 0.648 31 H 0.271 0.729 32 H 0.096 0.904 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 -9.398 -0.146 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C -0.162 4.162 4 C -0.073 4.073 5 C -0.208 4.208 6 C 0.350 3.650 7 O -0.449 6.449 8 N -0.361 5.361 9 C 0.005 3.995 10 C 0.153 3.847 11 O -0.364 6.364 12 C -0.574 4.574 13 H 0.109 0.891 14 C -0.125 4.125 15 N -0.512 5.512 16 Si 0.686 3.314 17 H -0.193 1.193 18 H -0.181 1.181 19 H -0.209 1.209 20 C -0.060 4.060 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.204 0.796 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.923 -10.481 -0.043 16.639 hybrid contribution -0.942 1.018 -0.725 1.565 sum -13.866 -9.463 -0.768 16.804 Atomic orbital electron populations 1.20891 0.92729 1.02578 1.02279 1.23658 0.96260 0.97900 0.97454 1.21836 0.92971 0.98551 1.02822 1.22446 0.93019 0.98481 0.93321 1.23016 0.93587 0.98988 1.05240 1.17938 0.87665 0.82417 0.76941 1.90751 1.70580 1.30584 1.52957 1.50071 1.09971 1.05485 1.70564 1.23281 0.82245 0.93507 1.00459 1.20566 0.90742 0.94491 0.78854 1.86473 1.89209 1.40111 1.20572 1.21240 1.23104 0.88464 1.24628 0.89059 1.25009 0.95688 0.95908 0.95920 1.69860 1.40714 0.98682 1.41951 0.87350 0.82791 0.78571 0.82684 1.19297 1.18057 1.20942 1.24702 1.01682 0.77658 1.01976 0.91827 0.91295 0.91294 0.86809 0.86513 0.85419 0.85870 0.90560 0.88678 0.79628 0.91886 0.88616 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 10.19 36.01 0.37 -0.52 16 2 C -0.13 -1.23 9.98 -36.00 -0.36 -1.59 16 3 C -0.14 -1.57 9.48 -38.02 -0.36 -1.93 16 4 C -0.05 -0.73 9.37 -37.42 -0.35 -1.08 16 5 C -0.19 -3.00 9.50 -37.45 -0.36 -3.36 16 6 C 0.56 11.30 7.97 -13.03 -0.10 11.19 16 7 O -0.57 -12.96 16.96 5.17 0.09 -12.87 16 8 N -0.63 -12.98 3.61 -179.80 -0.65 -13.63 16 9 C 0.13 2.70 8.23 -2.97 -0.02 2.67 16 10 C 0.19 4.44 1.06 -90.84 -0.10 4.35 16 11 O -0.55 -13.07 13.35 -35.23 -0.47 -13.54 16 12 C -0.54 -13.81 9.19 -34.44 -0.32 -14.13 16 13 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 14 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.88 -24.41 13.96 55.43 0.77 -23.64 16 16 Si 0.86 18.65 24.31 -169.99 -4.13 14.51 16 17 H -0.27 -5.68 7.05 56.52 0.40 -5.28 16 18 H -0.26 -5.15 5.16 56.52 0.29 -4.86 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.06 1.26 6.93 -2.83 -0.02 1.24 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.11 0.97 8.05 -52.48 -0.42 0.55 16 25 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 26 H 0.13 1.84 7.52 -52.48 -0.39 1.44 16 27 H 0.12 1.75 7.88 -52.48 -0.41 1.33 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16 30 H 0.35 7.86 3.57 45.56 0.16 8.03 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.10 1.82 8.09 -51.92 -0.42 1.40 16 33 H 0.07 1.33 6.83 -51.93 -0.35 0.97 16 LS Contribution 285.92 15.07 4.31 4.31 Total: -1.00 -30.20 285.92 -5.85 -36.05 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.05 Total: 9.98 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.72 Total: -1.17 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.12 Total: -37.27 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.38 Total: -26.41 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.13 Total: 14.51 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.20 -5.85 -36.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.473 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds