Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33400 * 120.00384 * 2 1 4 4 C 1.46341 * 120.00352 * 180.02562 * 3 2 1 5 5 C 1.35173 * 120.00190 * 180.02562 * 4 3 2 6 6 C 1.46263 * 119.99777 * 180.02562 * 5 4 3 7 7 O 1.21720 * 120.00502 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.47576 * 134.49390 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.11846 * 155.36116 * 9 8 6 11 11 O 1.42894 * 113.74258 * 269.15648 * 10 9 8 12 12 C 1.50696 * 113.73834 * 137.95019 * 10 9 8 13 13 H 1.07999 * 120.00319 * 1.93267 * 12 10 9 14 14 C 1.37885 * 119.99717 * 181.92651 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47805 * 134.45494 * 359.86935 * 8 6 5 21 21 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47044 * 299.99701 * 1 2 3 23 23 H 1.09003 * 109.47128 * 59.99299 * 1 2 3 24 24 H 1.08004 * 119.99654 * 180.02562 * 2 1 3 25 25 H 1.08003 * 120.00380 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.99686 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.00124 * 359.97438 * 5 4 3 28 28 H 1.08999 * 113.76805 * 41.06190 * 9 8 6 29 29 H 1.09000 * 113.87378 * 269.67731 * 9 8 6 30 30 H 0.96701 * 113.99575 * 178.07128 * 11 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 32 32 H 1.09008 * 113.77106 * 90.37414 * 20 8 6 33 33 H 1.08997 * 113.84172 * 318.91386 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1552 0.0000 4 6 3.6375 1.1552 -0.0006 5 6 4.3134 2.3258 0.0000 6 6 5.7760 2.3257 -0.0012 7 8 6.3847 1.2716 -0.0021 8 7 6.4500 3.4930 -0.0012 9 6 7.8788 3.8622 -0.0016 10 6 7.4284 5.1880 -0.6415 11 8 7.4143 5.1618 -2.0701 12 6 8.1285 6.3999 -0.0829 13 1 8.8917 6.2825 0.6721 14 6 7.7947 7.6587 -0.5360 15 7 8.4061 8.7164 -0.0489 16 14 6.4743 7.8617 -1.8416 17 1 7.0981 7.8136 -3.1883 18 1 5.4815 6.7644 -1.7164 19 1 5.7934 9.1686 -1.6578 20 6 6.0540 4.9170 -0.0026 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 2.0470 -0.9354 -0.0004 25 1 1.6342 2.0906 0.0004 26 1 4.1775 0.2199 -0.0014 27 1 3.7734 3.2612 0.0004 28 1 8.4921 3.2441 -0.6573 29 1 8.3049 3.9778 0.9949 30 1 7.1038 5.9830 -2.4755 31 1 8.1715 9.6019 -0.3679 32 1 5.9413 5.3427 0.9945 33 1 5.2128 5.1396 -0.6590 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193975699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = -30.419333 kcal Electronic energy + Delta-G solvation = -16236.203152 eV Core-core repulsion = 13456.567108 eV Total energy + Delta-G solvation = -2779.636044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37308 -39.37739 -36.74874 -36.20679 -34.55467 -33.28486 -30.79801 -28.46960 -27.19335 -26.96379 -23.28197 -21.52073 -20.59445 -19.89283 -19.30681 -18.19580 -18.11562 -16.89941 -16.46578 -15.89740 -15.47643 -15.20263 -14.89653 -14.69487 -14.24579 -14.14613 -14.03530 -13.82821 -13.15077 -12.98312 -12.73340 -12.56626 -12.44943 -12.17321 -11.93750 -11.79760 -11.48052 -11.11451 -10.90071 -10.49487 -9.76375 -9.23458 -8.42582 -6.55728 -0.22152 1.26859 1.29722 1.41707 1.57651 1.88986 2.18909 2.42820 2.77420 3.21748 3.54774 3.82570 3.97488 4.11187 4.28061 4.35027 4.40912 4.52687 4.62833 4.65267 4.74636 4.76961 4.84921 4.91698 5.00387 5.24120 5.28971 5.46080 5.63855 5.80562 6.04297 6.52048 6.66650 6.76153 7.09028 7.13588 8.72875 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033963 B = 0.005417 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.234587 B = 5167.624166 C = 5676.342954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.173 4.173 4 C -0.018 4.018 5 C -0.224 4.224 6 C 0.553 3.447 7 O -0.605 6.605 8 N -0.632 5.632 9 C 0.122 3.878 10 C 0.185 3.815 11 O -0.561 6.561 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.028 3.972 15 N -0.924 5.924 16 Si 0.918 3.082 17 H -0.258 1.258 18 H -0.227 1.227 19 H -0.280 1.280 20 C 0.078 3.922 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.132 0.868 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.357 0.643 31 H 0.274 0.726 32 H 0.106 0.894 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 -10.444 -0.959 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 C -0.191 4.191 4 C -0.038 4.038 5 C -0.244 4.244 6 C 0.348 3.652 7 O -0.491 6.491 8 N -0.365 5.365 9 C -0.001 4.001 10 C 0.145 3.855 11 O -0.373 6.373 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.173 4.173 15 N -0.562 5.562 16 Si 0.742 3.258 17 H -0.183 1.183 18 H -0.150 1.150 19 H -0.206 1.206 20 C -0.045 4.045 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.138 0.862 25 H 0.150 0.850 26 H 0.135 0.865 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.210 0.790 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.428 -11.539 -0.851 20.094 hybrid contribution 0.118 1.152 -0.419 1.232 sum -16.310 -10.386 -1.270 19.378 Atomic orbital electron populations 1.20998 0.90733 1.03907 1.03138 1.24058 0.97787 0.97551 0.92686 1.21823 0.91147 1.00029 1.06105 1.22644 0.94700 0.97325 0.89166 1.22817 0.90829 1.00679 1.10115 1.18648 0.89372 0.81461 0.75691 1.90717 1.71751 1.31645 1.54947 1.50059 1.09327 1.06030 1.71035 1.23263 0.83276 0.92877 1.00637 1.20587 0.92714 0.93650 0.78594 1.86466 1.89521 1.40468 1.20807 1.21341 1.22757 0.90152 1.24100 0.92652 1.25845 0.98071 0.95212 0.98172 1.70001 1.42840 0.99390 1.43948 0.86340 0.80346 0.79414 0.79655 1.18347 1.15022 1.20642 1.24536 1.00222 0.77177 1.02547 0.90401 0.90277 0.90339 0.86248 0.85027 0.86491 0.83884 0.91318 0.87987 0.79038 0.91658 0.87597 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 10.19 71.24 0.73 -0.53 16 2 C -0.10 -1.49 9.98 24.59 0.25 -1.24 16 3 C -0.17 -3.21 9.48 23.28 0.22 -2.99 16 4 C -0.02 -0.47 9.37 23.67 0.22 -0.25 16 5 C -0.22 -6.80 9.50 23.65 0.22 -6.58 16 6 C 0.55 22.13 7.97 86.33 0.69 22.82 16 7 O -0.61 -27.96 16.96 -4.41 -0.07 -28.03 16 8 N -0.63 -25.73 3.61 -844.80 -3.05 -28.78 16 9 C 0.12 5.25 8.23 86.49 0.71 5.96 16 10 C 0.19 8.39 1.06 -10.88 -0.01 8.38 16 11 O -0.56 -25.81 13.35 -148.98 -1.99 -27.79 16 12 C -0.55 -28.66 9.19 25.60 0.24 -28.42 16 13 H 0.06 3.21 8.06 -2.91 -0.02 3.18 16 14 C 0.03 1.47 5.47 84.66 0.46 1.94 16 15 N -0.92 -52.63 13.96 21.45 0.30 -52.34 16 16 Si 0.92 37.39 24.31 68.60 1.67 39.06 16 17 H -0.26 -10.12 7.05 99.48 0.70 -9.42 16 18 H -0.23 -8.11 5.16 99.48 0.51 -7.60 16 19 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.08 2.98 6.93 86.45 0.60 3.58 16 21 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 23 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 24 H 0.12 1.61 8.05 -2.91 -0.02 1.58 16 25 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 26 H 0.12 3.23 7.52 -2.91 -0.02 3.21 16 27 H 0.14 3.69 7.88 -2.91 -0.02 3.66 16 28 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.10 4.16 8.09 -2.39 -0.02 4.14 16 30 H 0.36 15.14 3.57 -74.06 -0.26 14.88 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.11 3.85 8.09 -2.38 -0.02 3.83 16 33 H 0.09 3.10 6.83 -2.39 -0.02 3.08 16 Total: -1.00 -66.42 285.92 1.81 -64.60 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.64 Total: 30.60 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 4.32 Total: 2.68 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.75 Total: -81.11 kcal Atomic # 8 Polarization: -53.76 SS G_CDS: -2.06 Total: -55.83 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 1.67 Total: 39.06 kcal Total: -66.42 1.81 -64.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.182 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds