Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86301 * 109.47191 * 2 1 4 4 C 1.86303 * 109.47099 * 240.00202 * 2 1 3 5 5 O 1.63096 * 109.46980 * 120.00227 * 2 1 3 6 6 C 1.42894 * 114.00049 * 60.00079 * 5 2 1 7 7 C 1.50706 * 109.47168 * 89.99874 * 6 5 2 8 8 N 1.27942 * 119.99773 * 249.99632 * 7 6 5 9 9 Si 1.86802 * 120.00012 * 70.00159 * 7 6 5 10 10 H 1.48501 * 109.47200 * 89.99866 * 9 7 6 11 11 H 1.48498 * 109.46979 * 209.99786 * 9 7 6 12 12 H 1.48497 * 109.46842 * 329.99896 * 9 7 6 13 13 C 1.50703 * 109.47259 * 209.99777 * 6 5 2 14 14 C 1.38225 * 119.61869 * 154.99692 * 13 6 5 15 15 C 1.38635 * 119.15939 * 179.97438 * 14 13 6 16 16 C 1.38675 * 118.41956 * 0.02562 * 15 14 13 17 17 C 1.38186 * 119.16332 * 0.27967 * 16 15 14 18 18 N 1.31860 * 119.61591 * 334.98047 * 13 6 5 19 19 H 1.09001 * 109.47072 * 300.00250 * 1 2 3 20 20 H 1.09002 * 109.47002 * 59.99630 * 1 2 3 21 21 H 1.08995 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47033 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47449 * 300.00096 * 3 2 1 24 24 H 1.09001 * 109.47316 * 59.99900 * 3 2 1 25 25 H 1.09004 * 109.46972 * 300.00211 * 4 2 1 26 26 H 1.09003 * 109.47206 * 59.99666 * 4 2 1 27 27 H 1.08997 * 109.47365 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47314 * 329.99808 * 6 5 2 29 29 H 0.97001 * 119.99854 * 179.97438 * 8 7 6 30 30 H 1.07997 * 120.42090 * 359.96022 * 14 13 6 31 31 H 1.07998 * 120.78847 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.41399 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.61418 * 179.70216 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 8 2.4067 -0.7689 1.3317 6 6 1.9850 -2.1307 1.4293 7 6 2.9969 -3.0196 0.7532 8 7 2.7011 -3.6055 -0.3451 9 14 4.6829 -3.2661 1.5187 10 1 4.6433 -4.4309 2.4390 11 1 5.6811 -3.5152 0.4479 12 1 5.0647 -2.0482 2.2778 13 6 1.8674 -2.5173 2.8811 14 6 1.0181 -3.5444 3.2480 15 6 0.9177 -3.8925 4.5861 16 6 1.6782 -3.1910 5.5095 17 6 2.5007 -2.1717 5.0689 18 7 2.5760 -1.8721 3.7868 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 3.5740 1.7564 0.0005 23 1 2.1207 2.2704 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1206 -1.9059 -1.5212 26 1 2.1207 -0.3644 -2.4112 27 1 3.5740 -0.8778 -1.5215 28 1 1.0167 -2.2471 0.9428 29 1 3.3525 -4.1774 -0.7804 30 1 0.4400 -4.0689 2.5016 31 1 0.2627 -4.6910 4.9019 32 1 1.6246 -3.4350 6.5602 33 1 3.0925 -1.6174 5.7823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196507522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = -15.897325 kcal Electronic energy + Delta-G solvation = -15337.891974 eV Core-core repulsion = 12908.436359 eV Total energy + Delta-G solvation = -2429.455615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.32537 -38.69613 -35.86234 -33.38649 -32.77754 -29.46767 -28.68840 -28.29301 -27.89993 -24.45007 -23.68546 -21.26679 -18.71921 -17.96703 -17.34044 -16.57558 -16.45996 -16.24396 -15.22381 -14.71602 -14.47987 -14.19777 -14.10744 -13.95758 -13.70012 -13.56656 -13.21686 -13.16177 -13.02271 -12.89106 -12.69343 -12.37606 -12.05419 -11.68679 -11.51490 -10.81158 -10.64654 -10.41388 -10.27347 -10.16879 -9.80537 0.02851 0.32676 0.60996 1.07506 1.43949 1.51895 1.74066 1.94386 2.05912 2.11604 2.52434 2.78632 3.20143 3.56693 3.76787 3.93423 4.07968 4.14991 4.18571 4.53589 4.69421 4.74851 4.75866 4.78090 4.80882 4.82696 4.86373 4.98999 5.05686 5.20149 5.34130 5.55091 5.64092 5.69942 5.76266 6.64443 7.08424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.508 4.508 2 Si 1.252 2.748 3 C -0.465 4.465 4 C -0.518 4.518 5 O -0.593 6.593 6 C 0.207 3.793 7 C -0.025 4.025 8 N -0.607 5.607 9 Si 0.917 3.083 10 H -0.242 1.242 11 H -0.247 1.247 12 H -0.207 1.207 13 C 0.118 3.882 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.168 4.168 17 C 0.097 3.903 18 N -0.445 5.445 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.345 0.655 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -1.787 1.582 2.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.610 4.610 2 Si 1.389 2.611 3 C -0.572 4.572 4 C -0.620 4.620 5 O -0.549 6.549 6 C 0.148 3.852 7 C -0.275 4.275 8 N -0.223 5.223 9 Si 0.732 3.268 10 H -0.165 1.165 11 H -0.171 1.171 12 H -0.127 1.127 13 C -0.021 4.021 14 C -0.181 4.181 15 C -0.101 4.101 16 C -0.188 4.188 17 C -0.060 4.060 18 N -0.154 5.154 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.233 -1.223 1.314 1.810 hybrid contribution -0.378 -0.873 -0.182 0.968 sum -0.611 -2.095 1.132 2.459 Atomic orbital electron populations 1.26958 1.24967 1.04412 1.04673 0.77353 0.63634 0.64594 0.55474 1.26291 1.06908 1.19266 1.04692 1.27196 1.06364 1.10579 1.17891 1.85487 1.79004 1.24306 1.66146 1.19198 0.95602 0.80458 0.89926 1.30729 1.06337 0.94705 0.95737 1.68046 1.39856 1.06218 1.08157 0.85752 0.74838 0.84330 0.81899 1.16542 1.17079 1.12743 1.20880 0.93771 0.92955 0.94531 1.21913 1.00085 0.98554 0.97502 1.21598 0.97319 0.98511 0.92651 1.22288 0.97786 0.97436 1.01281 1.22939 0.96134 0.94683 0.92287 1.67530 1.20296 1.25949 1.01605 0.91028 0.90761 0.91344 0.90761 0.90614 0.90766 0.89130 0.91223 0.91642 0.88665 0.83758 0.84360 0.84395 0.84468 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -0.03 8.56 101.05 0.87 0.84 16 2 Si 1.25 -0.22 12.68 -169.99 -2.16 -2.37 16 3 C -0.47 -0.11 8.65 101.05 0.87 0.76 16 4 C -0.52 -0.27 7.98 101.05 0.81 0.53 16 5 O -0.59 -1.08 7.65 -35.23 -0.27 -1.35 16 6 C 0.21 0.26 2.11 -29.03 -0.06 0.20 16 7 C -0.03 -0.02 4.12 -13.90 -0.06 -0.08 16 8 N -0.61 -0.26 11.40 56.23 0.64 0.38 16 9 Si 0.92 1.46 27.67 -169.99 -4.70 -3.24 16 10 H -0.24 -0.50 7.11 56.52 0.40 -0.09 16 11 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 12 H -0.21 -0.59 7.11 56.52 0.40 -0.19 16 13 C 0.12 0.21 4.74 -82.58 -0.39 -0.18 16 14 C -0.16 0.00 9.77 -39.44 -0.39 -0.38 16 15 C -0.07 0.07 10.18 -39.27 -0.40 -0.33 16 16 C -0.17 0.15 10.11 -39.44 -0.40 -0.25 16 17 C 0.10 0.06 11.18 -17.55 -0.20 -0.14 16 18 N -0.44 -1.27 9.10 -9.47 -0.09 -1.36 16 19 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 20 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 21 H 0.07 -0.01 7.10 -51.93 -0.37 -0.38 16 22 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 23 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 24 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 25 H 0.09 0.09 5.48 -51.93 -0.28 -0.19 16 26 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 27 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 28 H 0.10 -0.04 6.09 -51.93 -0.32 -0.36 16 29 H 0.34 -0.37 8.23 -40.82 -0.34 -0.71 16 30 H 0.14 -0.28 8.06 -52.49 -0.42 -0.71 16 31 H 0.14 -0.45 8.06 -52.49 -0.42 -0.87 16 32 H 0.14 -0.44 8.06 -52.49 -0.42 -0.87 16 33 H 0.16 -0.28 8.06 -52.49 -0.42 -0.70 16 LS Contribution 282.09 15.07 4.25 4.25 Total: 0.00 -4.18 282.09 -6.35 -10.53 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -4.69 Total: -7.81 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 0.66 Total: 0.97 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: 0.55 Total: -0.98 kcal Atomic # 8 Polarization: -1.08 SS G_CDS: -0.27 Total: -1.35 kcal Atomic # 14 Polarization: 1.25 SS G_CDS: -6.86 Total: -5.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -4.18 -6.35 -10.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196507522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.364 kcal (2) G-P(sol) polarization free energy of solvation -4.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds