Wall clock time and date at job start Sun Mar 29 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86301 * 109.47191 * 2 1 4 4 C 1.86303 * 109.47099 * 240.00202 * 2 1 3 5 5 O 1.63096 * 109.46980 * 120.00227 * 2 1 3 6 6 C 1.42894 * 114.00049 * 60.00079 * 5 2 1 7 7 C 1.50706 * 109.47168 * 89.99874 * 6 5 2 8 8 N 1.27942 * 119.99773 * 249.99632 * 7 6 5 9 9 Si 1.86802 * 120.00012 * 70.00159 * 7 6 5 10 10 H 1.48501 * 109.47200 * 89.99866 * 9 7 6 11 11 H 1.48498 * 109.46979 * 209.99786 * 9 7 6 12 12 H 1.48497 * 109.46842 * 329.99896 * 9 7 6 13 13 C 1.50703 * 109.47259 * 209.99777 * 6 5 2 14 14 C 1.38225 * 119.61869 * 154.99692 * 13 6 5 15 15 C 1.38635 * 119.15939 * 179.97438 * 14 13 6 16 16 C 1.38675 * 118.41956 * 0.02562 * 15 14 13 17 17 C 1.38186 * 119.16332 * 0.27967 * 16 15 14 18 18 N 1.31860 * 119.61591 * 334.98047 * 13 6 5 19 19 H 1.09001 * 109.47072 * 300.00250 * 1 2 3 20 20 H 1.09002 * 109.47002 * 59.99630 * 1 2 3 21 21 H 1.08995 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47033 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47449 * 300.00096 * 3 2 1 24 24 H 1.09001 * 109.47316 * 59.99900 * 3 2 1 25 25 H 1.09004 * 109.46972 * 300.00211 * 4 2 1 26 26 H 1.09003 * 109.47206 * 59.99666 * 4 2 1 27 27 H 1.08997 * 109.47365 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.47314 * 329.99808 * 6 5 2 29 29 H 0.97001 * 119.99854 * 179.97438 * 8 7 6 30 30 H 1.07997 * 120.42090 * 359.96022 * 14 13 6 31 31 H 1.07998 * 120.78847 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.41399 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.61418 * 179.70216 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 8 2.4067 -0.7689 1.3317 6 6 1.9850 -2.1307 1.4293 7 6 2.9969 -3.0196 0.7532 8 7 2.7011 -3.6055 -0.3451 9 14 4.6829 -3.2661 1.5187 10 1 4.6433 -4.4309 2.4390 11 1 5.6811 -3.5152 0.4479 12 1 5.0647 -2.0482 2.2778 13 6 1.8674 -2.5173 2.8811 14 6 1.0181 -3.5444 3.2480 15 6 0.9177 -3.8925 4.5861 16 6 1.6782 -3.1910 5.5095 17 6 2.5007 -2.1717 5.0689 18 7 2.5760 -1.8721 3.7868 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 3.5740 1.7564 0.0005 23 1 2.1207 2.2704 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1206 -1.9059 -1.5212 26 1 2.1207 -0.3644 -2.4112 27 1 3.5740 -0.8778 -1.5215 28 1 1.0167 -2.2471 0.9428 29 1 3.3525 -4.1774 -0.7804 30 1 0.4400 -4.0689 2.5016 31 1 0.2627 -4.6910 4.9019 32 1 1.6246 -3.4350 6.5602 33 1 3.0925 -1.6174 5.7823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196507522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:18 Heat of formation + Delta-G solvation = -7.420777 kcal Electronic energy + Delta-G solvation = -15337.524403 eV Core-core repulsion = 12908.436359 eV Total energy + Delta-G solvation = -2429.088044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29052 -38.71767 -35.91406 -33.33490 -32.74479 -29.47996 -28.69061 -28.31139 -27.90340 -24.39369 -23.66493 -21.29389 -18.74591 -17.92750 -17.33582 -16.50905 -16.46706 -16.30351 -15.17798 -14.77919 -14.55146 -14.22355 -14.05259 -13.92235 -13.71782 -13.55249 -13.22311 -13.15830 -13.05517 -12.96239 -12.65749 -12.44600 -12.16486 -11.74500 -11.57793 -10.77181 -10.66345 -10.43836 -10.27024 -10.16364 -9.81836 0.06822 0.38329 0.55479 0.97150 1.30804 1.43531 1.66402 1.92004 1.95384 2.12351 2.51566 2.81804 3.23347 3.57893 3.82497 4.08628 4.14526 4.23132 4.28400 4.59763 4.72677 4.76481 4.77617 4.79684 4.80320 4.83635 4.85669 4.95395 5.13366 5.28375 5.36473 5.55442 5.62993 5.72286 5.79144 6.63712 7.11408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.511 4.511 2 Si 1.279 2.721 3 C -0.475 4.475 4 C -0.522 4.522 5 O -0.610 6.610 6 C 0.201 3.799 7 C -0.021 4.021 8 N -0.603 5.603 9 Si 0.929 3.071 10 H -0.250 1.250 11 H -0.244 1.244 12 H -0.232 1.232 13 C 0.097 3.903 14 C -0.166 4.166 15 C -0.079 4.079 16 C -0.167 4.167 17 C 0.078 3.922 18 N -0.479 5.479 19 H 0.067 0.933 20 H 0.078 0.922 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.353 0.647 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -2.481 1.585 3.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.613 4.613 2 Si 1.415 2.585 3 C -0.581 4.581 4 C -0.624 4.624 5 O -0.567 6.567 6 C 0.142 3.858 7 C -0.272 4.272 8 N -0.220 5.220 9 Si 0.746 3.254 10 H -0.174 1.174 11 H -0.167 1.167 12 H -0.154 1.154 13 C -0.041 4.041 14 C -0.186 4.186 15 C -0.104 4.104 16 C -0.186 4.186 17 C -0.079 4.079 18 N -0.188 5.188 19 H 0.086 0.914 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.179 0.821 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.042 -1.923 1.305 2.547 hybrid contribution -0.105 -0.659 -0.144 0.683 sum -1.147 -2.582 1.162 3.055 Atomic orbital electron populations 1.26981 1.24958 1.04680 1.04714 0.76887 0.63281 0.63731 0.54606 1.26402 1.06733 1.20017 1.04921 1.27254 1.06139 1.10523 1.18501 1.85479 1.79439 1.24824 1.66932 1.19354 0.96159 0.80130 0.90151 1.30546 1.05759 0.95087 0.95806 1.68020 1.40177 1.06084 1.07733 0.85583 0.75714 0.82708 0.81418 1.17419 1.16739 1.15374 1.21065 0.94589 0.93842 0.94610 1.22177 0.99762 0.98092 0.98548 1.21981 0.97320 0.98861 0.92287 1.22579 0.96873 0.96564 1.02602 1.23285 0.96966 0.95607 0.92011 1.67470 1.21440 1.27219 1.02679 0.91399 0.90298 0.90975 0.91154 0.89794 0.91144 0.89444 0.90780 0.92041 0.87189 0.82834 0.82573 0.81876 0.82092 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.01 8.56 113.37 0.97 0.98 16 2 Si 1.28 0.10 12.68 68.60 0.87 0.97 16 3 C -0.48 -0.55 8.65 113.37 0.98 0.43 16 4 C -0.52 -0.59 7.98 113.37 0.90 0.31 16 5 O -0.61 -2.81 7.65 -148.98 -1.14 -3.95 16 6 C 0.20 0.59 2.11 29.10 0.06 0.66 16 7 C -0.02 -0.05 4.12 88.68 0.37 0.31 16 8 N -0.60 -0.42 11.40 24.11 0.27 -0.14 16 9 Si 0.93 4.04 27.67 68.60 1.90 5.94 16 10 H -0.25 -1.32 7.11 99.48 0.71 -0.62 16 11 H -0.24 -0.82 7.11 99.48 0.71 -0.11 16 12 H -0.23 -1.90 7.11 99.48 0.71 -1.20 16 13 C 0.10 0.41 4.74 42.55 0.20 0.61 16 14 C -0.17 0.06 9.77 22.36 0.22 0.28 16 15 C -0.08 0.22 10.18 22.47 0.23 0.45 16 16 C -0.17 0.38 10.11 22.36 0.23 0.61 16 17 C 0.08 0.15 11.18 84.67 0.95 1.09 16 18 N -0.48 -3.30 9.10 -183.88 -1.67 -4.97 16 19 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 20 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 21 H 0.07 -0.05 7.10 -2.39 -0.02 -0.07 16 22 H 0.07 0.13 7.96 -2.39 -0.02 0.11 16 23 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 24 H 0.07 0.13 7.96 -2.39 -0.02 0.11 16 25 H 0.09 0.16 5.48 -2.38 -0.01 0.15 16 26 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 27 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 28 H 0.11 -0.11 6.09 -2.39 -0.01 -0.12 16 29 H 0.35 -0.84 8.23 -92.71 -0.76 -1.60 16 30 H 0.16 -0.78 8.06 -2.91 -0.02 -0.81 16 31 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 32 H 0.16 -1.26 8.06 -2.91 -0.02 -1.29 16 33 H 0.17 -0.44 8.06 -2.91 -0.02 -0.46 16 Total: 0.00 -10.21 282.09 6.42 -3.79 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: 1.09 Total: -7.36 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.10 Total: 5.73 kcal Atomic # 7 Polarization: -3.72 SS G_CDS: -1.40 Total: -5.12 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -1.14 Total: -3.95 kcal Atomic # 14 Polarization: 4.14 SS G_CDS: 2.77 Total: 6.91 kcal Total: -10.21 6.42 -3.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196507522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.629 kcal (2) G-P(sol) polarization free energy of solvation -10.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds