Wall clock time and date at job start Sun Mar 29 2020 22:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 O 1.33655 * 125.80192 * 270.34909 * 3 2 1 5 5 C 1.34213 * 110.91275 * 180.14449 * 4 3 2 6 6 C 1.34178 * 109.12071 * 359.54836 * 5 4 3 7 7 C 1.36414 * 125.80485 * 89.99521 * 3 2 1 8 8 C 1.47377 * 127.19315 * 0.03784 * 7 3 2 9 9 O 1.21617 * 120.00022 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00392 * 179.97438 * 8 7 3 11 11 C 1.46504 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46848 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47083 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00049 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00055 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00134 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46949 * 59.99590 * 17 15 13 19 19 H 1.48497 * 109.47188 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46771 * 300.00033 * 17 15 13 21 21 H 1.08991 * 109.47332 * 300.00423 * 1 2 3 22 22 H 1.09005 * 109.46497 * 60.00672 * 1 2 3 23 23 H 1.08996 * 109.46844 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47052 * 239.99496 * 2 1 3 25 25 H 1.09000 * 109.46447 * 119.99833 * 2 1 3 26 26 H 1.08002 * 125.44315 * 179.81711 * 5 4 3 27 27 H 1.08004 * 127.02354 * 180.30025 * 6 5 4 28 28 H 0.96994 * 119.99598 * 0.02562 * 10 8 7 29 29 H 1.09000 * 109.47042 * 299.99431 * 11 10 8 30 30 H 1.08999 * 109.47079 * 59.99891 * 11 10 8 31 31 H 1.09005 * 109.46852 * 300.00022 * 12 11 10 32 32 H 1.08997 * 109.46874 * 59.99957 * 12 11 10 33 33 H 0.97000 * 119.99716 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2868 2.1601 -1.0840 5 6 2.7241 3.3812 -0.7391 6 6 2.7575 3.4745 0.5990 7 6 2.2983 2.1732 1.1063 8 6 2.1553 1.7667 2.5157 9 8 1.7605 0.6494 2.7892 10 7 2.4620 2.6331 3.5015 11 6 2.3192 2.2291 4.9025 12 6 2.7291 3.3891 5.8120 13 6 2.5829 2.9734 7.2531 14 1 2.2322 1.9811 7.4960 15 6 2.8957 3.8600 8.2615 16 7 3.3222 5.0684 7.9658 17 14 2.7152 3.3444 10.0479 18 1 3.5884 2.1736 10.3159 19 1 3.1128 4.4703 10.9307 20 1 1.3011 2.9792 10.3172 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.0006 4.1652 -1.4286 27 1 3.0593 4.3307 1.1839 28 1 2.7765 3.5243 3.2833 29 1 1.2809 1.9626 5.0998 30 1 2.9589 1.3688 5.0995 31 1 3.7674 3.6561 5.6148 32 1 2.0891 4.2490 5.6148 33 1 3.5427 5.6920 8.6753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234142379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:07 Heat of formation + Delta-G solvation = -66.920810 kcal Electronic energy + Delta-G solvation = -16150.983175 eV Core-core repulsion = 13369.764308 eV Total energy + Delta-G solvation = -2781.218867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.54844 -40.40095 -36.66684 -35.03428 -34.80581 -33.72596 -31.48717 -29.73904 -27.06691 -24.98573 -23.90411 -22.95137 -21.82461 -20.70873 -18.91249 -18.44603 -17.28437 -16.88120 -16.69563 -16.39071 -16.30679 -15.52564 -15.27466 -14.76740 -14.55198 -14.27674 -13.92986 -13.57955 -13.26270 -13.22802 -12.93301 -12.56810 -12.46824 -12.25634 -11.95959 -11.67239 -11.49273 -10.95334 -10.84151 -10.60581 -10.05302 -9.53805 -8.24453 -6.35365 0.33100 1.13632 1.41908 1.44442 1.52423 1.82950 2.29912 2.33005 2.47592 3.10289 3.57245 3.79565 3.89553 4.16262 4.30674 4.42422 4.47183 4.48359 4.63949 4.76323 4.82745 4.95182 5.02179 5.11336 5.24515 5.31657 5.38607 5.48587 5.55729 5.77153 6.04574 6.14750 6.60989 6.77373 7.22702 7.34064 8.87381 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043846 B = 0.004530 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.452556 B = 6179.213367 C = 6715.245277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C 0.073 3.927 4 O -0.176 6.176 5 C -0.023 4.023 6 C -0.205 4.205 7 C -0.268 4.268 8 C 0.577 3.423 9 O -0.580 6.580 10 N -0.712 5.712 11 C 0.142 3.858 12 C 0.023 3.977 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.008 3.992 16 N -0.927 5.927 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.254 0.746 27 H 0.172 0.828 28 H 0.408 0.592 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -3.725 -19.024 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C 0.019 3.981 4 O -0.072 6.072 5 C -0.088 4.088 6 C -0.224 4.224 7 C -0.273 4.273 8 C 0.366 3.634 9 O -0.463 6.463 10 N -0.362 5.362 11 C 0.019 3.981 12 C -0.014 4.014 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.111 0.889 26 H 0.270 0.730 27 H 0.189 0.811 28 H 0.243 0.757 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.141 -4.421 -19.017 19.641 hybrid contribution 0.270 0.704 1.346 1.543 sum -1.870 -3.717 -17.671 18.154 Atomic orbital electron populations 1.21654 0.92784 1.03494 1.01605 1.20416 0.97452 0.85802 1.05236 1.23070 0.96925 0.94976 0.83082 1.83777 1.65177 1.23902 1.34345 1.24692 1.01729 0.85930 0.96451 1.23174 1.06242 0.97329 0.95680 1.21249 1.15369 0.97888 0.92786 1.17687 0.76636 0.84155 0.84873 1.90691 1.49075 1.21691 1.84858 1.45953 1.66804 1.17227 1.06193 1.21254 0.99731 0.98249 0.78860 1.19131 0.95873 0.92899 0.93535 1.21431 1.45325 0.99917 0.92013 0.92209 1.25877 0.94357 0.94774 1.04070 1.70055 1.45369 1.06673 1.34537 0.85485 0.79007 0.77966 0.78509 1.19309 1.20522 1.19302 0.94515 0.91386 0.89688 0.87420 0.88937 0.73018 0.81075 0.75677 0.93378 0.93336 0.97381 0.97389 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.90 71.98 0.71 -2.18 16 2 C -0.05 -1.19 5.94 29.85 0.18 -1.01 16 3 C 0.07 1.90 6.63 25.26 0.17 2.07 16 4 O -0.18 -3.83 10.52 4.47 0.05 -3.78 16 5 C -0.02 -0.40 12.03 66.89 0.80 0.41 16 6 C -0.21 -4.64 10.60 23.65 0.25 -4.39 16 7 C -0.27 -8.06 6.31 -18.99 -0.12 -8.18 16 8 C 0.58 21.58 7.81 86.65 0.68 22.26 16 9 O -0.58 -24.69 14.84 -4.08 -0.06 -24.75 16 10 N -0.71 -26.94 5.55 -466.40 -2.59 -29.53 16 11 C 0.14 6.37 5.61 86.38 0.48 6.86 16 12 C 0.02 1.19 5.09 29.85 0.15 1.34 16 13 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 17 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.09 2.55 6.48 -2.39 -0.02 2.54 16 26 H 0.25 1.68 8.06 -2.91 -0.02 1.66 16 27 H 0.17 3.24 7.74 -2.91 -0.02 3.22 16 28 H 0.41 13.55 7.64 -92.71 -0.71 12.84 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.10 290.66 4.11 -64.99 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.40 Total: 14.37 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.00 Total: -12.68 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.30 Total: -83.96 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.01 Total: -28.53 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.10 4.11 -64.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234142379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.933 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds