Wall clock time and date at job start Sun Mar 29 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50693 * 109.46957 * 2 1 4 4 O 1.33655 * 125.80118 * 270.00019 * 3 2 1 5 5 C 1.34218 * 110.90852 * 180.02562 * 4 3 2 6 6 C 1.34178 * 109.12401 * 359.70330 * 5 4 3 7 7 C 1.36418 * 125.80271 * 90.00168 * 3 2 1 8 8 C 1.47371 * 127.19226 * 359.97438 * 7 3 2 9 9 O 1.21614 * 120.00155 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00089 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99910 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 324.99754 * 11 10 8 13 13 C 1.52997 * 109.47473 * 85.00011 * 11 10 8 14 14 C 1.50708 * 109.47008 * 205.00179 * 11 10 8 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00195 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99968 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46959 * 89.99935 * 18 16 14 20 20 H 1.48491 * 109.47193 * 210.00326 * 18 16 14 21 21 H 1.48498 * 109.47096 * 330.00479 * 18 16 14 22 22 H 1.08996 * 109.46862 * 59.99982 * 1 2 3 23 23 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46607 * 299.99850 * 1 2 3 25 25 H 1.09002 * 109.46967 * 239.99588 * 2 1 3 26 26 H 1.08996 * 109.46862 * 120.00018 * 2 1 3 27 27 H 1.08001 * 125.43629 * 179.97438 * 5 4 3 28 28 H 1.07995 * 127.02451 * 180.26602 * 6 5 4 29 29 H 0.96994 * 120.00115 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 31 31 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 32 32 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 33 33 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1579 -1.0840 5 6 2.7258 3.3806 -0.7391 6 6 2.7530 3.4761 0.5990 7 6 2.2984 2.1732 1.1064 8 6 2.1543 1.7670 2.5157 9 8 1.7593 0.6498 2.7892 10 7 2.4602 2.6337 3.5015 11 6 2.3175 2.2296 4.9024 12 1 1.4582 1.5666 5.0036 13 6 3.5827 1.4972 5.3535 14 6 2.1122 3.4522 5.7594 15 1 2.0907 4.4321 5.3058 16 6 1.9519 3.3197 7.1224 17 7 1.9786 2.1265 7.6747 18 14 1.6982 4.8352 8.1847 19 1 0.2461 5.1266 8.2925 20 1 2.2558 4.5894 9.5388 21 1 2.3911 5.9943 7.5670 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.0034 4.1643 -1.4285 28 1 3.0507 4.3337 1.1839 29 1 2.7749 3.5248 3.2834 30 1 4.4420 2.1602 5.2523 31 1 3.7311 0.6129 4.7337 32 1 3.4767 1.1970 6.3960 33 1 1.8662 2.0333 8.6337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234159757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:25 Heat of formation + Delta-G solvation = -59.788560 kcal Electronic energy + Delta-G solvation = -16692.474511 eV Core-core repulsion = 13911.564922 eV Total energy + Delta-G solvation = -2780.909590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.50118 -40.28876 -36.77681 -34.94111 -34.46364 -33.54687 -30.87294 -29.61234 -27.36326 -25.37533 -24.01040 -22.84286 -21.38942 -20.84211 -19.14469 -18.04797 -17.23711 -17.11141 -16.71205 -16.11840 -15.64185 -15.31249 -15.26018 -14.58448 -14.45727 -13.88076 -13.71733 -13.54942 -13.25708 -12.98423 -12.89906 -12.77631 -12.45213 -12.28354 -12.13128 -11.93886 -11.13368 -10.83934 -10.77915 -10.59577 -9.80974 -9.47350 -8.18769 -6.36614 0.40457 1.18811 1.44367 1.45190 1.56049 1.87759 2.35614 2.47406 2.68227 3.11667 3.61323 3.91546 3.96274 4.17583 4.31642 4.47638 4.62761 4.73354 4.79689 4.90905 4.94993 5.04114 5.07122 5.14969 5.29147 5.41349 5.43161 5.59647 5.67405 5.88180 6.07869 6.10531 6.70297 6.95814 7.30239 7.51979 8.87879 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.005951 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.077227 B = 4704.123603 C = 5088.500534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.067 3.933 4 O -0.176 6.176 5 C -0.023 4.023 6 C -0.204 4.204 7 C -0.266 4.266 8 C 0.568 3.432 9 O -0.592 6.592 10 N -0.698 5.698 11 C 0.272 3.728 12 H 0.000 1.000 13 C -0.133 4.133 14 C -0.549 4.549 15 H 0.072 0.928 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.974 3.026 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.260 1.260 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.031 0.969 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.257 0.743 28 H 0.172 0.828 29 H 0.402 0.598 30 H 0.039 0.961 31 H 0.012 0.988 32 H 0.069 0.931 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 3.186 -16.749 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C 0.014 3.986 4 O -0.072 6.072 5 C -0.088 4.088 6 C -0.223 4.223 7 C -0.270 4.270 8 C 0.357 3.643 9 O -0.475 6.475 10 N -0.346 5.346 11 C 0.168 3.832 12 H 0.018 0.982 13 C -0.192 4.192 14 C -0.587 4.587 15 H 0.090 0.910 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.799 3.201 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.184 1.184 22 H 0.089 0.911 23 H 0.103 0.897 24 H 0.051 0.949 25 H 0.127 0.873 26 H 0.106 0.894 27 H 0.272 0.728 28 H 0.190 0.810 29 H 0.237 0.763 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.151 2.241 -16.635 16.825 hybrid contribution 0.047 0.971 1.188 1.535 sum 1.198 3.211 -15.447 15.823 Atomic orbital electron populations 1.21644 0.92913 1.03402 1.01478 1.20375 0.97397 0.85995 1.05010 1.23002 0.97460 0.95031 0.83127 1.83762 1.65314 1.23908 1.34214 1.24707 1.01876 0.85856 0.96349 1.23159 1.06347 0.97167 0.95671 1.21376 1.14774 0.97976 0.92909 1.17801 0.76985 0.84453 0.85055 1.90667 1.49792 1.22130 1.84952 1.46100 1.65451 1.16314 1.06758 1.18374 0.93448 0.94737 0.76596 0.98192 1.21898 0.98073 0.97321 1.01878 1.21531 1.51410 0.93056 0.92720 0.91013 1.25814 0.94190 0.99390 0.99141 1.70050 1.49462 1.24037 1.11992 0.85311 0.78311 0.78957 0.77557 1.20311 1.20752 1.18373 0.91128 0.89741 0.94950 0.87294 0.89403 0.72773 0.81014 0.76326 0.94207 0.96926 0.91236 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.90 71.99 0.71 -2.74 16 2 C -0.05 -1.38 5.94 29.85 0.18 -1.20 16 3 C 0.07 2.02 6.63 25.26 0.17 2.19 16 4 O -0.18 -4.31 10.52 4.41 0.05 -4.27 16 5 C -0.02 -0.45 12.03 66.89 0.80 0.36 16 6 C -0.20 -5.23 10.60 23.65 0.25 -4.98 16 7 C -0.27 -9.23 6.31 -18.99 -0.12 -9.35 16 8 C 0.57 25.18 7.78 86.65 0.67 25.86 16 9 O -0.59 -30.10 14.51 -4.08 -0.06 -30.16 16 10 N -0.70 -31.44 5.07 -449.41 -2.28 -33.72 16 11 C 0.27 14.68 2.56 44.25 0.11 14.79 16 12 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 13 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 14 C -0.55 -29.85 8.73 25.60 0.22 -29.63 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.01 0.80 5.30 84.65 0.45 1.25 16 17 N -0.92 -53.29 11.32 21.44 0.24 -53.04 16 18 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 2.90 6.49 -2.39 -0.02 2.89 16 27 H 0.26 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.17 3.67 7.74 -2.91 -0.02 3.65 16 29 H 0.40 15.56 7.71 -92.71 -0.71 14.84 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 33 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -69.88 285.84 4.50 -65.38 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.40 Total: 21.16 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.12 Total: -9.77 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.03 Total: -86.76 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.01 Total: -34.43 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.88 4.50 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234159757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.592 kcal (2) G-P(sol) polarization free energy of solvation -69.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds