Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36936 * 120.00193 * 2 1 4 4 H 1.08001 * 120.00121 * 203.04400 * 3 2 1 5 5 C 1.38807 * 119.99794 * 23.04218 * 3 2 1 6 6 N 1.31616 * 120.00531 * 12.96775 * 5 3 2 7 7 Si 1.86802 * 119.99829 * 192.96900 * 5 3 2 8 8 H 1.48496 * 109.47335 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47361 * 119.99980 * 7 5 3 10 10 H 1.48503 * 109.46971 * 239.99933 * 7 5 3 11 11 C 1.46503 * 120.00029 * 180.02562 * 2 1 3 12 12 C 1.50708 * 109.47221 * 90.00065 * 11 2 1 13 13 O 1.21273 * 119.99819 * 359.97438 * 12 11 2 14 14 C 1.46974 * 120.00073 * 180.02562 * 12 11 2 15 15 C 1.39955 * 120.19766 * 359.97438 * 14 12 11 16 16 C 1.37758 * 119.85113 * 180.02562 * 15 14 12 17 17 C 1.38525 * 120.25473 * 0.02562 * 16 15 14 18 18 C 1.38231 * 120.39549 * 0.02562 * 17 16 15 19 19 C 1.38274 * 120.14555 * 359.96928 * 18 17 16 20 20 F 1.35094 * 120.12825 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47206 * 275.11910 * 1 2 3 22 22 H 1.08998 * 109.47271 * 35.12262 * 1 2 3 23 23 H 1.09004 * 109.47462 * 155.11966 * 1 2 3 24 24 H 0.96997 * 120.00515 * 180.02562 * 6 5 3 25 25 H 1.09004 * 109.47381 * 330.00344 * 11 2 1 26 26 H 1.09000 * 109.47397 * 209.99937 * 11 2 1 27 27 H 1.07998 * 120.07313 * 0.27301 * 15 14 12 28 28 H 1.07997 * 119.87649 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.80528 * 179.97438 * 17 16 15 30 30 H 1.08004 * 119.92287 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3400 0.4705 6 7 0.4121 2.2597 1.1464 7 14 2.3153 4.0074 0.1445 8 1 3.5691 3.8264 -0.6304 9 1 1.3706 4.8504 -0.6314 10 1 2.6241 4.6708 1.4367 11 6 2.1974 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4216 13 8 2.0542 -1.0205 -2.3431 14 6 3.1707 -2.9547 -1.6908 15 6 3.6272 -3.7460 -0.6305 16 6 4.3037 -4.9175 -0.8909 17 6 4.5340 -5.3147 -2.1978 18 6 4.0886 -4.5406 -3.2529 19 6 3.4078 -3.3618 -3.0104 20 9 2.9722 -2.6058 -4.0418 21 1 -0.3634 0.0917 1.0236 22 1 -0.3634 0.8405 -0.5912 23 1 -0.3634 -0.9323 -0.4324 24 1 -0.0150 3.0663 1.4748 25 1 1.6084 -2.0287 0.5129 26 1 3.1499 -1.1387 0.5133 27 1 3.4461 -3.4409 0.3896 28 1 4.6565 -5.5282 -0.0731 29 1 5.0654 -6.2343 -2.3937 30 1 4.2720 -4.8578 -4.2689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259686305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = -24.972572 kcal Electronic energy + Delta-G solvation = -16332.237087 eV Core-core repulsion = 13429.376927 eV Total energy + Delta-G solvation = -2902.860160 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.71269 -39.40572 -37.82651 -35.05245 -31.86598 -31.00488 -30.47208 -27.36332 -25.78203 -23.90004 -22.64936 -21.35340 -19.33457 -17.57891 -16.74699 -16.26847 -16.15112 -15.52227 -14.90287 -14.57137 -14.26912 -14.11112 -13.86555 -13.14319 -13.00810 -12.76349 -12.18285 -12.07775 -11.74336 -11.32929 -11.18069 -10.82379 -10.67503 -10.38803 -9.94658 -9.87640 -9.16951 -9.13112 -8.74640 -8.47672 -6.74062 -5.70290 -3.17164 0.71420 1.13492 2.83949 3.41541 3.48851 3.52200 3.75373 4.18461 4.41647 4.59932 4.64419 4.81590 5.06000 5.21568 5.45397 5.57670 5.63419 5.83483 5.94975 6.13298 6.13573 6.21744 6.29396 6.39271 6.77508 6.78777 7.43248 7.73095 7.84209 8.23587 8.43763 9.23964 9.85350 10.33163 11.34774 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.038650 B = 0.006182 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.267200 B = 4528.481887 C = 4705.059056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.584 5.584 3 C -0.252 4.252 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.114 3.886 12 C 0.348 3.652 13 O -0.421 6.421 14 C -0.192 4.192 15 C -0.048 4.048 16 C -0.147 4.147 17 C -0.073 4.073 18 C -0.173 4.173 19 C 0.145 3.855 20 F -0.120 7.120 21 H 0.035 0.965 22 H 0.043 0.957 23 H -0.004 1.004 24 H 0.252 0.748 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -16.039 -3.243 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.304 5.304 3 C -0.381 4.381 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C -0.016 4.016 12 C 0.218 3.782 13 O -0.293 6.293 14 C -0.195 4.195 15 C -0.066 4.066 16 C -0.165 4.165 17 C -0.092 4.092 18 C -0.192 4.192 19 C 0.125 3.875 20 F -0.098 7.098 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.014 0.986 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.889 -15.443 -3.691 17.308 hybrid contribution 0.364 0.924 -0.474 1.100 sum 7.253 -14.520 -4.165 16.756 Atomic orbital electron populations 1.20826 0.82092 0.95740 0.99385 1.43637 1.02018 0.99922 1.84848 1.19171 0.98201 0.85589 1.35139 0.91614 1.24977 0.97802 0.98517 0.98106 1.70075 1.19430 1.27156 1.38519 0.86162 0.78665 0.84153 0.77433 1.20304 1.21514 1.21673 1.21044 0.98499 0.90572 0.91448 1.24627 0.75912 0.82236 0.95391 1.90522 1.39659 1.51548 1.47576 1.21411 1.05210 1.00656 0.92186 1.21450 0.93494 0.92686 0.98958 1.21180 1.00924 0.97429 0.96971 1.21156 0.97094 0.98772 0.92139 1.21131 1.02227 0.94842 1.00986 1.18112 0.95398 0.89876 0.84136 1.91578 1.86822 1.74868 1.56526 0.94665 0.93842 0.98550 0.93762 0.90928 0.89837 0.83851 0.84964 0.85016 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.26 8.98 59.84 0.54 4.79 16 2 N -0.58 -15.33 2.41 -182.50 -0.44 -15.77 16 3 C -0.25 -7.22 9.65 -15.06 -0.15 -7.37 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.46 16 5 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 6 N -0.91 -27.01 10.71 55.49 0.59 -26.42 16 7 Si 0.91 22.70 29.57 -169.99 -5.03 17.67 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.11 2.32 4.73 -5.19 -0.02 2.29 16 12 C 0.35 7.06 7.18 -30.77 -0.22 6.84 16 13 O -0.42 -10.45 15.42 5.56 0.09 -10.37 16 14 C -0.19 -3.07 5.87 -105.01 -0.62 -3.68 16 15 C -0.05 -0.57 9.47 -39.11 -0.37 -0.94 16 16 C -0.15 -1.38 10.02 -39.65 -0.40 -1.78 16 17 C -0.07 -0.68 10.04 -39.48 -0.40 -1.07 16 18 C -0.17 -2.00 10.01 -39.57 -0.40 -2.40 16 19 C 0.14 2.27 7.29 -38.86 -0.28 1.98 16 20 F -0.12 -2.21 15.55 2.25 0.04 -2.18 16 21 H 0.04 0.95 7.34 -51.93 -0.38 0.57 16 22 H 0.04 1.23 7.34 -51.93 -0.38 0.85 16 23 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 25 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 26 H 0.08 1.56 7.99 -51.93 -0.41 1.15 16 27 H 0.14 1.43 7.05 -52.49 -0.37 1.06 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 269.46 15.07 4.06 4.06 Total: -1.00 -34.15 269.46 -6.29 -40.44 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -3.20 Total: -6.15 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.40 Total: -1.30 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.15 Total: -42.18 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.15 -6.29 -40.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259686305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds