Wall clock time and date at job start Sun Mar 29 2020 22:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35125 * 126.44293 * 2 1 4 4 O 1.33937 * 108.76773 * 179.75115 * 3 2 1 5 5 C 1.34913 * 109.38149 * 0.37986 * 4 3 2 6 6 C 1.46656 * 125.98454 * 179.88920 * 5 4 3 7 7 O 1.21697 * 120.00029 * 173.09631 * 6 5 4 8 8 N 1.34781 * 120.00068 * 353.37102 * 6 5 4 9 9 C 1.46494 * 119.99884 * 3.05569 * 8 6 5 10 10 C 1.46504 * 119.99797 * 183.05724 * 8 6 5 11 11 H 1.09002 * 109.47279 * 359.97438 * 10 8 6 12 12 C 1.52994 * 109.46943 * 239.99771 * 10 8 6 13 13 C 1.50699 * 109.46716 * 120.00044 * 10 8 6 14 14 H 1.07995 * 120.00632 * 359.97438 * 13 10 8 15 15 C 1.37881 * 119.99687 * 180.02562 * 13 10 8 16 16 N 1.31515 * 120.00188 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99982 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47249 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46781 * 119.99729 * 17 15 13 20 20 H 1.48500 * 109.47178 * 239.99756 * 17 15 13 21 21 C 1.36541 * 108.02614 * 359.62391 * 5 4 3 22 22 H 1.08998 * 109.46928 * 270.02021 * 1 2 3 23 23 H 1.08997 * 109.47175 * 30.02308 * 1 2 3 24 24 H 1.09007 * 109.46956 * 150.02609 * 1 2 3 25 25 H 1.08003 * 125.61759 * 359.94542 * 3 2 1 26 26 H 1.09003 * 109.47162 * 84.14251 * 9 8 6 27 27 H 1.08998 * 109.47108 * 204.14692 * 9 8 6 28 28 H 1.09001 * 109.47375 * 324.14274 * 9 8 6 29 29 H 1.09002 * 109.47152 * 300.00100 * 12 10 8 30 30 H 1.09004 * 109.47388 * 60.00255 * 12 10 8 31 31 H 1.08997 * 109.47123 * 180.02562 * 12 10 8 32 32 H 0.97000 * 119.99943 * 180.02562 * 16 15 13 33 33 H 1.08000 * 126.64743 * 180.22743 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0055 5 6 3.6260 -0.6682 0.0007 6 6 4.8379 -1.4941 0.0020 7 8 4.7510 -2.7019 0.1239 8 7 6.0482 -0.9151 -0.1263 9 6 6.1581 0.5438 -0.1997 10 6 7.2538 -1.7449 -0.1924 11 1 6.9755 -2.7964 -0.1221 12 6 8.1843 -1.3855 0.9676 13 6 7.9621 -1.4984 -1.4995 14 1 7.5548 -0.7945 -2.2101 15 6 9.1297 -2.1724 -1.7886 16 7 9.6255 -3.0300 -0.9235 17 14 10.0074 -1.8675 -3.4092 18 1 9.2504 -0.8649 -4.2011 19 1 11.3762 -1.3572 -3.1423 20 1 10.0929 -3.1384 -4.1726 21 6 2.3408 -1.1292 0.0004 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8903 -0.5135 25 1 1.9770 2.1145 -0.0008 26 1 6.1677 0.9587 0.8082 27 1 7.0815 0.8133 -0.7123 28 1 5.3069 0.9452 -0.7497 29 1 8.4627 -0.3339 0.8978 30 1 7.6720 -1.5637 1.9131 31 1 9.0815 -2.0025 0.9183 32 1 10.4471 -3.5039 -1.1268 33 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:02 Heat of formation + Delta-G solvation = -19.920012 kcal Electronic energy + Delta-G solvation = -16876.628369 eV Core-core repulsion = 14097.447609 eV Total energy + Delta-G solvation = -2779.180760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.50674 -38.79449 -35.49947 -34.10177 -32.81800 -30.49974 -29.27241 -27.13281 -26.15379 -25.23889 -23.32177 -20.89524 -20.43767 -18.67874 -16.96399 -16.47821 -16.27654 -15.83436 -15.33151 -14.33622 -14.17985 -13.52430 -13.23323 -13.17618 -12.88806 -12.62772 -12.49242 -12.33192 -11.75129 -11.59140 -11.26887 -11.04255 -10.84505 -10.72075 -10.26740 -10.19540 -9.54470 -9.39040 -9.17498 -8.45663 -8.42337 -7.63895 -6.09297 -4.17556 1.41381 2.47491 3.01261 3.25680 3.33619 3.36930 3.76662 3.93094 4.38630 4.85837 4.86981 5.02571 5.22018 5.41643 5.53227 5.70141 5.80971 5.88265 6.03202 6.08135 6.13873 6.46930 6.54653 6.74920 6.82388 7.01252 7.08612 7.38225 7.49634 7.68634 7.98612 8.14855 8.42982 8.74954 8.93030 9.48770 10.96168 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.005994 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.461986 B = 4670.144999 C = 4766.605806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.194 4.194 3 C -0.035 4.035 4 O -0.154 6.154 5 C -0.050 4.050 6 C 0.582 3.418 7 O -0.534 6.534 8 N -0.578 5.578 9 C 0.080 3.920 10 C 0.256 3.744 11 H 0.066 0.934 12 C -0.146 4.146 13 C -0.527 4.527 14 H 0.061 0.939 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.900 3.100 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.139 4.139 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.202 0.798 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.012 0.988 31 H 0.095 0.905 32 H 0.263 0.737 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 9.222 2.028 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.195 4.195 3 C -0.104 4.104 4 O -0.049 6.049 5 C -0.102 4.102 6 C 0.368 3.632 7 O -0.414 6.414 8 N -0.307 5.307 9 C -0.063 4.063 10 C 0.156 3.844 11 H 0.083 0.917 12 C -0.205 4.205 13 C -0.566 4.566 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.160 4.160 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.219 0.781 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.267 8.643 2.114 15.155 hybrid contribution 0.340 0.252 -0.873 0.970 sum -11.927 8.896 1.241 14.931 Atomic orbital electron populations 1.20144 0.89105 1.02517 1.01977 1.20413 0.97321 0.92624 1.09158 1.24152 0.81053 0.99745 1.05450 1.84371 1.28173 1.22131 1.70231 1.22631 0.96813 0.80184 1.10565 1.16758 0.81412 0.86279 0.78726 1.90825 1.85486 1.12712 1.52328 1.48248 1.07029 1.07629 1.67820 1.21807 1.03127 0.80570 1.00798 1.19072 0.78871 0.91699 0.94711 0.91662 1.22084 1.02320 1.00524 0.95523 1.21346 1.07993 1.25274 1.01985 0.92057 1.24895 0.96942 0.94729 0.97165 1.69892 1.21295 1.26376 1.34903 0.86410 0.79317 0.78161 0.83335 1.19784 1.20881 1.20860 1.21764 0.90715 1.00292 1.03186 0.91559 0.91762 0.91484 0.78105 0.93682 0.89691 0.91537 0.95022 0.96854 0.88646 0.92663 0.82663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.01 0.37 -0.35 16 2 C -0.19 -2.47 6.14 -104.93 -0.64 -3.11 16 3 C -0.03 -0.42 12.00 29.62 0.36 -0.06 16 4 O -0.15 -2.39 7.29 4.98 0.04 -2.36 16 5 C -0.05 -0.91 6.77 -36.80 -0.25 -1.16 16 6 C 0.58 13.14 7.64 -12.86 -0.10 13.04 16 7 O -0.53 -13.71 16.20 5.19 0.08 -13.63 16 8 N -0.58 -13.11 2.75 -176.82 -0.49 -13.60 16 9 C 0.08 1.48 8.56 59.84 0.51 1.99 16 10 C 0.26 6.68 2.63 -69.08 -0.18 6.50 16 11 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 12 C -0.15 -3.55 8.97 37.15 0.33 -3.22 16 13 C -0.53 -14.38 7.95 -34.44 -0.27 -14.65 16 14 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.14 -2.23 10.58 -39.39 -0.42 -2.65 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.60 7.11 -51.93 -0.37 1.23 16 28 H 0.07 1.12 5.41 -51.93 -0.28 0.84 16 29 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.16 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -31.17 281.09 -5.11 -36.28 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.21 Total: -0.54 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.38 Total: -1.98 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.14 Total: -38.05 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.12 Total: -15.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.17 -5.11 -36.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.360 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds